Hodgkin-Huxley revisited: reparametrization and identifiability analysis of the classic action potential model with approximate Bayesian methods

被引:19
|
作者
Daly, Aidan C. [1 ]
Gavaghan, David J. [1 ]
Holmes, Chris [2 ]
Cooper, Jonathan [1 ]
机构
[1] Univ Oxford, Dept Comp Sci, Oxford, England
[2] Univ Oxford, Dept Stat, Oxford OX1 3TG, England
来源
ROYAL SOCIETY OPEN SCIENCE | 2015年 / 2卷 / 12期
基金
英国工程与自然科学研究理事会;
关键词
Hodgkin Huxley; approximate Bayesian computation; identifiability; cardiac cell modelling; functional curation; parameter fitting; ELECTROPHYSIOLOGICAL MODELS; ION CHANNELS; COMPUTATION;
D O I
10.1098/rsos.150499
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
As cardiac cell models become increasingly complex, a correspondingly complex 'genealogy' of inherited parameter values has also emerged. The result has been the loss of a direct link between model parameters and experimental data, limiting both reproducibility and the ability to re-fit to new data. We examine the ability of approximate Bayesian computation (ABC) to infer parameter distributions in the seminal action potential model of Hodgkin and Huxley, for which an immediate and documented connection to experimental results exists. The ability of ABC to produce tight posteriors around the reported values for the gating rates of sodium and potassium ion channels validates the precision of this early work, while the highly variable posteriors around certain voltage dependency parameters suggests that voltage clamp experiments alone are insufficient to constrain the full model. Despite this, Hodgkin and Huxley's estimates are shown to be competitive with those produced by ABC, and the variable behaviour of posterior parametrized models under complex voltage protocols suggests that with additional data the model could be fully constrained. This work will provide the starting point for a full identifiability analysis of commonly used cardiac models, as well as a template for informative, data-driven parametrization of newly proposed models.
引用
收藏
页数:20
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