Small Molecule Microcrystal Electron Diffraction for the Pharmaceutical Industry-Lessons Learned From Examining Over Fifty Samples

被引:35
作者
Bruhn, Jessica F. [1 ]
Scapin, Giovanna [1 ]
Cheng, Anchi [1 ]
Mercado, Brandon Q. [2 ]
Waterman, David G. [3 ,4 ]
Ganesh, Thejusvi [1 ]
Dallakyan, Sargis [1 ]
Read, Brandon N. [1 ]
Nieusma, Travis [1 ]
Lucier, Kyle W. [1 ]
Mayer, Megan L. [1 ,6 ]
Chiang, Nicole J. [1 ]
Poweleit, Nicole [1 ]
McGilvray, Philip T. [1 ]
Wilson, Timothy S. [1 ]
Mashore, Michael [1 ]
Hennessy, Camille [1 ]
Thomson, Sean [1 ]
Wang, Bo [5 ]
Potter, Clinton S. [1 ]
Carragher, Bridget [1 ]
机构
[1] NanoImaging Serv, San Diego, CA 92121 USA
[2] Yale Univ, Dept Chem, New Haven, CT USA
[3] UKRI STFC Rutherford Appleton Lab, Didcot, Oxon, England
[4] Rutherford Appleton Lab, CCP4, Res Complex Harwell, Didcot, Oxon, England
[5] Biogen, Cambridge, MA USA
[6] Harvard Med Sch, Harvard Cryoelectron Microscopy Ctr Struct Biol, Boston, MA 02115 USA
关键词
crystallography; transmission elections microscopy; electron diffraction (ED); MicroED; drug development; structure; small molecule; medicinal chemistry;
D O I
10.3389/fmolb.2021.648603
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The emerging field of microcrystal electron diffraction (MicroED) is of great interest toindustrial researchers working in the drug discovery and drug development space. Thepromise of being able to routinely solve high-resolution crystal structures without theneed to grow large crystals is very appealing. Despite MicroED's exciting potential,adoption across the pharmaceutical industry has been slow, primarily owing to a lack ofaccess to specialized equipment and expertise. Here we present our experience buildinga small molecule MicroED service pipeline for members of the pharmaceutical industry.In the past year, we have examined more than fifty small molecule samples submittedby our clients, the majority of which have yielded data suitable for structure solution.We also detail our experience determining small molecule MicroED structures ofpharmaceutical interest and offer some insights into the typical experimental outcomes.This experience has led us to conclude that small molecule MicroED adoption willcontinue to grow within the pharmaceutical industry where it is able to rapidly providestructures inaccessible by other methods.
引用
收藏
页数:16
相关论文
共 38 条
  • [1] Chiral one- and two-dimensional silver(I)-biotin coordination polymers
    Altaf, Muhammad
    Stoeckli-Evans, Helen
    [J]. ACTA CRYSTALLOGRAPHICA SECTION C-STRUCTURAL CHEMISTRY, 2013, 69 : 127 - +
  • [2] STEREOCHEMISTRY, A BASIS FOR SOPHISTICATED NONSENSE IN PHARMACOKINETICS AND CLINICAL-PHARMACOLOGY
    ARIENS, EJ
    [J]. EUROPEAN JOURNAL OF CLINICAL PHARMACOLOGY, 1984, 26 (06) : 663 - 668
  • [3] A Workflow for Protein Structure Determination From Thin Crystal Lamella by Micro-Electron Diffraction
    Beale, Emma, V
    Waterman, David G.
    Hecksel, Corey
    van Rooyen, Jason
    Gilchrist, James B.
    Parkhurst, James M.
    de Haas, Felix
    Buijsse, Bart
    Evans, Gwyndaf
    Zhang, Peijun
    [J]. FRONTIERS IN MOLECULAR BIOSCIENCES, 2020, 7
  • [4] Polymorph Impact on the Bioavailability and Stability of Poorly Soluble Drugs
    Censi, Roberta
    Di Martino, Piera
    [J]. MOLECULES, 2015, 20 (10) : 18759 - 18776
  • [5] Leginon: New features and applications
    Cheng, Anchi
    Negro, Carl
    Bruhn, Jessica F.
    Rice, William J.
    Dallakyan, Sargis
    Eng, Edward T.
    Waterman, David G.
    Potter, Clinton S.
    Carragher, Bridget
    [J]. PROTEIN SCIENCE, 2021, 30 (01) : 136 - 150
  • [6] Electron diffraction data processing with DIALS
    Clabbers, Max T. B.
    Gruene, Tim
    Parkhurst, James M.
    Abrahams, Jan Pieter
    Waterman, David G.
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2018, 74 : 506 - 518
  • [7] DAHL GV, 1985, BLOOD, V66, P1110
  • [8] OLEX2: a complete structure solution, refinement and analysis program
    Dolomanov, Oleg V.
    Bourhis, Luc J.
    Gildea, Richard J.
    Howard, Judith A. K.
    Puschmann, Horst
    [J]. JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2009, 42 : 339 - 341
  • [9] Machining protein microcrystals for structure determination by electron diffraction
    Duyvesteyn, Helen M. E.
    Kotecha, Abhay
    Ginn, Helen M.
    Hecksel, Corey W.
    Beale, Emma V.
    de Haas, Felix
    Evans, Gwyndaf
    Zhang, Peijun
    Chiu, Wah
    Stuart, David I.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2018, 115 (38) : 9569 - 9573
  • [10] Features and development of Coot
    Emsley, P.
    Lohkamp, B.
    Scott, W. G.
    Cowtan, K.
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2010, 66 : 486 - 501