Cumulative association of 22 genetic variants with seropositive rheumatoid arthritis risk

被引:78
作者
Karlson, Elizabeth W. [1 ]
Chibnik, Lori B. [1 ]
Kraft, Peter [2 ,3 ,4 ]
Cui, Jing [1 ]
Keenan, Brendan T. [1 ]
Ding, Bo [5 ]
Raychaudhuri, Souyma [1 ]
Klareskog, Lars [6 ]
Alfredsson, Lars [5 ]
Plenge, Robert M. [1 ]
机构
[1] Brigham & Womens Hosp, Div Rheumatol Immunol & Allergy, Boston, MA 02115 USA
[2] Harvard Univ, Sch Med, Boston, MA USA
[3] Brigham & Womens Hosp, Channing Lab, Boston, MA 02115 USA
[4] Harvard Univ, Sch Publ Hlth, Dept Epidemiol, Boston, MA 02115 USA
[5] Karolinska Inst, Inst Environm Med, S-10401 Stockholm, Sweden
[6] Karolinska Inst, Karolinska Hosp, Dept Med, Rheumatol Unit, S-10401 Stockholm, Sweden
基金
英国医学研究理事会;
关键词
GENOME-WIDE ASSOCIATION; ONSET UNDIFFERENTIATED ARTHRITIS; CYCLIC CITRULLINATED PEPTIDE; SYSTEMIC-LUPUS-ERYTHEMATOSUS; CIGARETTE-SMOKING; COMMON VARIANTS; PROSTATE-CANCER; PREDICTION RULE; DISEASE RISK; LOCI;
D O I
10.1136/ard.2009.120170
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Background Recent discoveries of risk alleles have made it possible to define genetic risk profiles for patients with rheumatoid arthritis (RA). This study examined whether a cumulative score based on 22 validated genetic risk alleles for seropositive RA would identify high-risk, asymptomatic individuals who might benefit from preventive interventions. Methods Eight human leucocyte antigen (HLA) alleles and 14 single-nucleotide polymorphisms representing 13 validated RA risk loci were genotyped among 289 white seropositive cases and 481 controls from the US Nurses' Health Studies (NHS) and 629 white cyclic-citrullinated peptide antibody-positive cases and 623 controls from the Swedish Epidemiologic Investigation of Rheumatoid Arthritis (EIRA). A weighted genetic risk score (GRS) was created, in which the weight for each risk allele is the log of the published odds ratio (OR). Logistic regression was used to study associations with incident RA. Area under the curve (AUC) statistics were compared from a clinical-only model and clinical plus genetic model in each cohort. Results Patients with GRS >1.25 SD of the mean had a significantly higher OR of seropositive RA in both NHS (OR = 2.9, 95% CI 1.8 to 4.6) and EIRA (OR 3.4, 95% CI 2.3 to 5.0) referent to the population average. In NHS, the AUC for a clinical model was 0.57 and for a clinical plus genetic model was 0.66, and in EIRA was 0.63 and 0.75, respectively. Conclusion The combination of 22 risk alleles into a weighted GRS significantly stratifies individuals for RA risk beyond clinical risk factors alone. Given the low incidence of RA, the clinical utility of a weighted GRS is limited in the general population.
引用
收藏
页码:1077 / 1085
页数:9
相关论文
共 51 条
[1]   Incidence and prevalence of rheumatoid arthritis, based on the 1987 American College of Rheumatology criteria: A systematic review [J].
Alamanos, Yannis ;
Voulgari, Paraskevi V. ;
Drosos, Alexandros A. .
SEMINARS IN ARTHRITIS AND RHEUMATISM, 2006, 36 (03) :182-188
[2]  
[Anonymous], MOL EPIDEMIOLOGY APP
[3]   THE AMERICAN-RHEUMATISM-ASSOCIATION 1987 REVISED CRITERIA FOR THE CLASSIFICATION OF RHEUMATOID-ARTHRITIS [J].
ARNETT, FC ;
EDWORTHY, SM ;
BLOCH, DA ;
MCSHANE, DJ ;
FRIES, JF ;
COOPER, NS ;
HEALEY, LA ;
KAPLAN, SR ;
LIANG, MH ;
LUTHRA, HS ;
MEDSGER, TA ;
MITCHELL, DM ;
NEUSTADT, DH ;
PINALS, RS ;
SCHALLER, JG ;
SHARP, JT ;
WILDER, RL ;
HUNDER, GG .
ARTHRITIS AND RHEUMATISM, 1988, 31 (03) :315-324
[4]   Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts [J].
Aulchenko, Yurii S. ;
Ripatti, Samuli ;
Lindqvist, Ida ;
Boomsma, Dorret ;
Heid, Iris M. ;
Pramstaller, Peter P. ;
Penninx, Brenda W. J. H. ;
Janssens, A. Cecile J. W. ;
Wilson, James F. ;
Spector, Tim ;
Martin, Nicholas G. ;
Pedersen, Nancy L. ;
Kyvik, Kirsten Ohm ;
Kaprio, Jaakko ;
Hofman, Albert ;
Freimer, Nelson B. ;
Jarvelin, Marjo-Riitta ;
Gyllensten, Ulf ;
Campbell, Harry ;
Rudan, Igor ;
Johansson, Asa ;
Marroni, Fabio ;
Hayward, Caroline ;
Vitart, Veronique ;
Jonasson, Inger ;
Pattaro, Cristian ;
Wright, Alan ;
Hastie, Nick ;
Pichler, Irene ;
Hicks, Andrew A. ;
Falchi, Mario ;
Willemsen, Gonneke ;
Hottenga, Jouke-Jan ;
de Geus, Eco J. C. ;
Montgomery, Grant W. ;
Whitfield, John ;
Magnusson, Patrik ;
Saharinen, Juha ;
Perola, Markus ;
Silander, Kaisa ;
Isaacs, Aaron ;
Sijbrands, Eric J. G. ;
Uitterlinden, Andre G. ;
Witteman, Jacqueline C. M. ;
Oostra, Ben A. ;
Elliott, Paul ;
Ruokonen, Aimo ;
Sabatti, Chiara ;
Gieger, Christian ;
Meitinger, Thomas .
NATURE GENETICS, 2009, 41 (01) :47-55
[5]   Rheumatoid arthritis susceptibility loci at chromosomes 10p15, 12q13 and 22q13 [J].
Barton, Anne ;
Thomson, Wendy ;
Ke, Xiayi ;
Eyre, Steve ;
Hinks, Anne ;
Bowes, John ;
Plant, Darren ;
Gibbons, Laura J. ;
Wilson, Anthony G. ;
Bax, Deborah E. ;
Morgan, Ann W. ;
Emery, Paul ;
Steer, Sophia ;
Hocking, Lynne ;
Reid, David M. ;
Wordsworth, Paul ;
Harrison, Pille ;
Worthington, Jane .
NATURE GENETICS, 2008, 40 (10) :1156-1159
[6]   A missense single-nucleotide polymorphism in a gene encoding a protein tyrosine phosphatase (PTPN22) is associated with rheumatoid arthritis [J].
Begovich, AB ;
Carlton, VEH ;
Honigberg, LA ;
Schrodi, SJ ;
Chokkalingam, AP ;
Alexander, HC ;
Ardlie, KG ;
Huang, QQ ;
Smith, AM ;
Spoerke, JM ;
Conn, MT ;
Chang, M ;
Chang, SYP ;
Saiki, RK ;
Catanese, JJ ;
Leong, DU ;
Garcia, VE ;
McAllister, LB ;
Jeffery, DA ;
Lee, AT ;
Batliwalla, F ;
Remmers, E ;
Criswell, LA ;
Seldin, MF ;
Kastner, DL ;
Amos, CI ;
Sninsky, JJ ;
Gregersen, PK .
AMERICAN JOURNAL OF HUMAN GENETICS, 2004, 75 (02) :330-337
[7]   Personalized medicine in the era of genomics [J].
Burke, Wylie ;
Psaty, Bruce M. .
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2007, 298 (14) :1682-1684
[8]   Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls [J].
Burton, Paul R. ;
Clayton, David G. ;
Cardon, Lon R. ;
Craddock, Nick ;
Deloukas, Panos ;
Duncanson, Audrey ;
Kwiatkowski, Dominic P. ;
McCarthy, Mark I. ;
Ouwehand, Willem H. ;
Samani, Nilesh J. ;
Todd, John A. ;
Donnelly, Peter ;
Barrett, Jeffrey C. ;
Davison, Dan ;
Easton, Doug ;
Evans, David ;
Leung, Hin-Tak ;
Marchini, Jonathan L. ;
Morris, Andrew P. ;
Spencer, Chris C. A. ;
Tobin, Martin D. ;
Attwood, Antony P. ;
Boorman, James P. ;
Cant, Barbara ;
Everson, Ursula ;
Hussey, Judith M. ;
Jolley, Jennifer D. ;
Knight, Alexandra S. ;
Koch, Kerstin ;
Meech, Elizabeth ;
Nutland, Sarah ;
Prowse, Christopher V. ;
Stevens, Helen E. ;
Taylor, Niall C. ;
Walters, Graham R. ;
Walker, Neil M. ;
Watkins, Nicholas A. ;
Winzer, Thilo ;
Jones, Richard W. ;
McArdle, Wendy L. ;
Ring, Susan M. ;
Strachan, David P. ;
Pembrey, Marcus ;
Breen, Gerome ;
St Clair, David ;
Caesar, Sian ;
Gordon-Smith, Katherine ;
Jones, Lisa ;
Fraser, Christine ;
Green, Elain K. .
NATURE, 2007, 447 (7145) :661-678
[9]   Comparison of Threshold Cutpoints and Continuous Measures of Anti-Cyclic Citrullinated Peptide Antibodies in Predicting Future Rheumatoid Arthritis [J].
Chibnik, Lori B. ;
Mandl, Lisa A. ;
Costenbader, Karen H. ;
Schur, Peter H. ;
Karlson, Elizabeth W. .
JOURNAL OF RHEUMATOLOGY, 2009, 36 (04) :706-711
[10]   Joint Effects of Common Genetic Variants on the Risk for Type 2 Diabetes in U. S. Men and Women of European Ancestry [J].
Cornelis, Marilyn C. ;
Qi, Lu ;
Zhang, Cuilin ;
Kraft, Peter ;
Manson, JoAnn ;
Cai, Tianxi ;
Hunter, David J. ;
Hu, Frank B. .
ANNALS OF INTERNAL MEDICINE, 2009, 150 (08) :541-W98