Next Generation Sequencing in Non-Small Cell Lung Cancer: New Avenues Toward the Personalized Medicine

被引:39
作者
Coco, Simona [1 ]
Truini, Anna [1 ,2 ]
Vanni, Irene [1 ]
Dal Bello, Maria Giovanna [1 ]
Alama, Angela [1 ]
Rijavec, Erika [1 ]
Genova, Carlo [1 ]
Barletta, Giulia [1 ]
Sini, Claudio [1 ]
Burrafato, Giovanni [1 ]
Biello, Federica [1 ]
Boccardo, Francesco [2 ,3 ]
Grossi, Francesco [1 ]
机构
[1] IRCCS AOU San Martino IST, Lung Canc Unit, I-16132 Genoa, Italy
[2] Univ Genoa, Dipartimento Med Interna & Specialita Med DIMI, I-16132 Genoa, Italy
[3] IRCCS AOU San Martino IST, UOC Clin Oncol Med, I-16132 Genoa, Italy
关键词
Drug resistance; mutational landscape; next generation sequencing; NSCLC; personalized therapy; targeted sequencing; TYROSINE KINASE INHIBITORS; CIRCULATING DNA; EGFR MUTATIONS; BRAF MUTATIONS; GENOME; STATISTICS; RESISTANCE; KRAS; ALK; ADENOCARCINOMA;
D O I
10.2174/1389450116666141210094640
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
Non-small cell lung cancer (NSCLC) is one of the most common causes of cancer-related death worldwide. Based on the patient's stage of disease, treatment options include surgery, radiotherapy, and chemotherapy. Although chemotherapy remains the main therapeutic approach for advanced NSCLC, targeted therapy represents a good chance of treatment for this subgroup of patients. Currently this approach is based on previous evaluation of clinically relevant mutations and the Sanger sequencing is the main approach to assign mutational status and to guide the appropriate treatment; however this tool is characterized by a low sensitivity. Recently, the advent of next-generation sequencing (NGS) has dramatically revolutionized the molecular knowledge of cancer by increasing the feasibility and possibility to sequence DNA ranging from large scale studies to targeted regions. This review reports an overview of different applications of the NGS as novel approach to study NSCLC, thereby providing information about mutational spectrum of this cancer in order to identify novel targetable mutations and to predict the emergence of drug resistance. All studies demonstrated several advantages of this approach over the traditional tools. In particular the NGS was also able to reveal mutations in low percentage, and to screen the mutational status of different critical samples such as biopsies, cytological samples and circulating plasma DNA, offering innovative diagnostic opportunities. Despite several problems have to be overcome toward the personalized therapy, the NGS represents a highly attractive system to identify mutations improving the outcome of patients with this deadly disease.
引用
收藏
页码:47 / 59
页数:13
相关论文
共 72 条
  • [21] Selumetinib plus docetaxel for KRAS-mutant advanced non-small-cell lung cancer: a randomised, multicentre, placebo-controlled, phase 2 study
    Jaenne, Pasi A.
    Shaw, Alice T.
    Pereira, Jose Rodrigues
    Jeannin, Gaelle
    Vansteenkiste, Johan
    Barrios, Carlos
    Franke, Fabio Andre
    Grinsted, Lynda
    Zazulina, Victoria
    Smith, Paul
    Smith, Ian
    Crino, Lucio
    [J]. LANCET ONCOLOGY, 2013, 14 (01) : 38 - 47
  • [22] Cancer statistics, 2004
    Jemal, A
    Tiwari, RC
    Murray, T
    Ghafoor, A
    Samuels, A
    Ward, E
    Feuer, EJ
    Thun, MJ
    [J]. CA-A CANCER JOURNAL FOR CLINICIANS, 2004, 54 (01) : 8 - 29
  • [23] Cancer statistics, 2007
    Jemal, Ahmedin
    Siegel, Rebecca
    Ward, Elizabeth
    Murray, Taylor
    Xu, Jiaquan
    Thun, Michael J.
    [J]. CA-A CANCER JOURNAL FOR CLINICIANS, 2007, 57 (01) : 43 - 66
  • [24] A transforming KIF5B and RET gene fusion in lung adenocarcinoma revealed from whole-genome and transcriptome sequencing
    Ju, Young Seok
    Lee, Won-Chul
    Shin, Jong-Yeon
    Lee, Seungbok
    Bleazard, Thomas
    Won, Jae-Kyung
    Kim, Young Tae
    Kim, Jong-Il
    Kang, Jin-Hyoung
    Seo, Jeong-Sun
    [J]. GENOME RESEARCH, 2012, 22 (03) : 436 - 445
  • [25] Diverse somatic mutation patterns and pathway alterations in human cancers
    Kan, Zhengyan
    Jaiswal, Bijay S.
    Stinson, Jeremy
    Janakiraman, Vasantharajan
    Bhatt, Deepali
    Stern, Howard M.
    Yue, Peng
    Haverty, Peter M.
    Bourgon, Richard
    Zheng, Jianbiao
    Moorhead, Martin
    Chaudhuri, Subhra
    Tomsho, Lynn P.
    Peters, Brock A.
    Pujara, Kanan
    Cordes, Shaun
    Davis, David P.
    Carlton, Victoria E. H.
    Yuan, Wenlin
    Li, Li
    Wang, Weiru
    Eigenbrot, Charles
    Kaminker, Joshua S.
    Eberhard, David A.
    Waring, Paul
    Schuster, Stephan C.
    Modrusan, Zora
    Zhang, Zemin
    Stokoe, David
    de Sauvage, Frederic J.
    Faham, Malek
    Seshagiri, Somasekar
    [J]. NATURE, 2010, 466 (7308) : 869 - U103
  • [26] Recent trends of cancer in Europe: A combined approach of incidence, survival and mortality for 17 cancer sites since the 1990S
    Karim-Kos, Henrike E.
    de Vries, Esther
    Soerjomataram, Isabelle
    Lemmens, Valery
    Siesling, Sabine
    Coebergh, Jan Willem W.
    [J]. EUROPEAN JOURNAL OF CANCER, 2008, 44 (10) : 1345 - 1389
  • [27] Targeted next-generation sequencing using fine-needle aspirates from adenocarcinomas of the lung
    Karnes, Hope E.
    Duncavage, Eric J.
    Bernadt, Cory T.
    [J]. CANCER CYTOPATHOLOGY, 2014, 122 (02) : 104 - 113
  • [28] Ku CS, 2013, EXPERT REV MED DEVIC, V10, P1, DOI [10.1586/erd.12.63, 10.1586/ERD.12.63]
  • [29] Anaplastic Lymphoma Kinase Inhibition in Non-Small-Cell Lung Cancer
    Kwak, Eunice L.
    Bang, Yung-Jue
    Camidge, D. Ross
    Shaw, Alice T.
    Solomon, Benjamin
    Maki, Robert G.
    Ou, Sai-Hong I.
    Dezube, Bruce J.
    Jaenne, Pasi A.
    Costa, Daniel B.
    Varella-Garcia, Marileila
    Kim, Woo-Ho
    Lynch, Thomas J.
    Fidias, Panos
    Stubbs, Hannah
    Engelman, Jeffrey A.
    Sequist, Lecia V.
    Tan, WeiWei
    Gandhi, Leena
    Mino-Kenudson, Mari
    Wei, Greg C.
    Shreeve, S. Martin
    Ratain, Mark J.
    Settleman, Jeffrey
    Christensen, James G.
    Haber, Daniel A.
    Wilner, Keith
    Salgia, Ravi
    Shapiro, Geoffrey I.
    Clark, Jeffrey W.
    Iafrate, A. John
    [J]. NEW ENGLAND JOURNAL OF MEDICINE, 2010, 363 (18) : 1693 - 1703
  • [30] Mutational heterogeneity in cancer and the search for new cancer-associated genes
    Lawrence, Michael S.
    Stojanov, Petar
    Polak, Paz
    Kryukov, Gregory V.
    Cibulskis, Kristian
    Sivachenko, Andrey
    Carter, Scott L.
    Stewart, Chip
    Mermel, Craig H.
    Roberts, Steven A.
    Kiezun, Adam
    Hammerman, Peter S.
    McKenna, Aaron
    Drier, Yotam
    Zou, Lihua
    Ramos, Alex H.
    Pugh, Trevor J.
    Stransky, Nicolas
    Helman, Elena
    Kim, Jaegil
    Sougnez, Carrie
    Ambrogio, Lauren
    Nickerson, Elizabeth
    Shefler, Erica
    Cortes, Maria L.
    Auclair, Daniel
    Saksena, Gordon
    Voet, Douglas
    Noble, Michael
    DiCara, Daniel
    Lin, Pei
    Lichtenstein, Lee
    Heiman, David I.
    Fennell, Timothy
    Imielinski, Marcin
    Hernandez, Bryan
    Hodis, Eran
    Baca, Sylvan
    Dulak, Austin M.
    Lohr, Jens
    Landau, Dan-Avi
    Wu, Catherine J.
    Melendez-Zajgla, Jorge
    Hidalgo-Miranda, Alfredo
    Koren, Amnon
    McCarroll, Steven A.
    Mora, Jaume
    Lee, Ryan S.
    Crompton, Brian
    Onofrio, Robert
    [J]. NATURE, 2013, 499 (7457) : 214 - 218