Pseudoracemic amino acid complexes: blind predictions for flexible two-component crystals

被引:41
作者
Gorbitz, Carl Henrik [1 ]
Dalhus, Bjorn [2 ,3 ]
Day, Graeme M. [4 ]
机构
[1] Univ Oslo, Dept Chem, N-0316 Oslo, Norway
[2] Natl Hosp, Inst Clin Biochem, Oslo, Norway
[3] Natl Hosp, Inst Med Microbiol, Oslo, Norway
[4] Univ Cambridge, Dept Chem, Cambridge CB2 1EW, England
关键词
SMALL ORGANIC-MOLECULES; DISTRIBUTED MULTIPOLE; RIGID MOLECULES; DL-NORLEUCINE; FORCE-FIELD; BETA-FORM; AGGREGATION; SERIES; POTENTIALS; ENERGIES;
D O I
10.1039/c004055j
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Ab initio prediction of the crystal packing in complexes between two flexible molecules is a particularly challenging computational chemistry problem. In this work we present results of single crystal structure determinations as well as theoretical predictions for three 1 : 1 complexes between hydrophobic L-and D-amino acids (pseudoracemates), known from previous crystallographic work to form structures with one of two alternative hydrogen bonding arrangements. These are accurately reproduced in the theoretical predictions together with a series of patterns that have never been observed experimentally. In this bewildering forest of potential polymorphs, hydrogen bonding arrangements and molecular conformations, the theoretical predictions succeeded, for all three complexes, in finding the correct hydrogen bonding pattern. For two of the complexes, the calculations also reproduce the exact space group and side chain orientations in the best ranked predicted structure. This includes one complex for which the observed crystal packing clearly contradicted previous experience based on experimental data for a substantial number of related amino acid complexes. The results highlight the significant recent advances that have been made in computational methods for crystal structure prediction.
引用
收藏
页码:8466 / 8477
页数:12
相关论文
共 49 条
  • [1] Spherical and aspherical intermolecular force fields for sulfur allotropes
    Abraha, A
    Williams, DE
    [J]. INORGANIC CHEMISTRY, 1999, 38 (19) : 4224 - 4228
  • [2] [Anonymous], 2001, CERIUS2 VERS 4 6
  • [3] DETERMINING ATOM-CENTERED MONOPOLES FROM MOLECULAR ELECTROSTATIC POTENTIALS - THE NEED FOR HIGH SAMPLING DENSITY IN FORMAMIDE CONFORMATIONAL-ANALYSIS
    BRENEMAN, CM
    WIBERG, KB
    [J]. JOURNAL OF COMPUTATIONAL CHEMISTRY, 1990, 11 (03) : 361 - 373
  • [4] *BRUK AXS INC, 1998, SMART
  • [5] Bruker, 2001, SAINT PLUS
  • [6] Prediction and observation of isostructurality induced by solvent incorporation in multicomponent crystals
    Cabeza, Aurora J. Cruz
    Day, Graeme M.
    Motherwell, W. D. Samuel
    Jones, William
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2006, 128 (45) : 14466 - 14467
  • [7] COMPACK:: a program for identifying crystal structure similarity using distances
    Chisholm, JA
    Motherwell, S
    [J]. JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2005, 38 : 228 - 231
  • [8] Role of electrostatic interactions in determining the crystal structures of polar organic molecules. A distributed multipole study
    Coombes, DS
    Price, SL
    Willock, DJ
    Leslie, M
    [J]. JOURNAL OF PHYSICAL CHEMISTRY, 1996, 100 (18) : 7352 - 7360
  • [9] Molecular Polarization Effects on the Relative Energies of the Real and Putative Crystal Structures of Valine
    Cooper, Timothy G.
    Hejczyk, Katarzyna E.
    Jones, William
    Day, Graeme M.
    [J]. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2008, 4 (10) : 1795 - 1805
  • [10] Database guided conformation selection in crystal structure prediction of alanine
    Cooper, Timothy G.
    Jones, William
    Motherwell, W. D. Samuel
    Day, Graeme M.
    [J]. CRYSTENGCOMM, 2007, 9 (07): : 595 - 602