A theoretical study of spin states in Ni-S4 complexes and models of the [NiFe] hydrogenase active site

被引:45
作者
Bruschi, M
De Gioia, L
Zampella, G
Reiher, M
Fantucci, P
Stein, M
机构
[1] Univ Milano Bicocca, Dept Biosci & Biotechnol, I-20126 Milan, Italy
[2] Univ Milano Bicocca, Dept Environm Sci, I-20126 Milan, Italy
[3] Univ Bonn, Lehrstuhl Theoret Chem, D-53115 Bonn, Germany
[4] Anterio Res GmbH, D-68615 Mannheim, Germany
来源
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY | 2004年 / 9卷 / 07期
关键词
density functional theory; nickel-sulfur coordination compounds; NiFe] hydrogenases;
D O I
10.1007/s00775-004-0588-2
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We have applied density functional theory, using both pure (BP86) and hybrid (B3LYP and B3LYP*) functionals, to investigate structural parameters and reaction energies for nickel(II)-sulfur coordination compounds, as well as for small cluster models of the Ni-SI and Ni-R redox state of [NiFe] hydrogenases. Results obtained investigating experimentally well-characterized complexes show that BP86 is well suited to describe the structural features of this class of compounds. However, the singlet-triplet energy splitting and even the computed ground state are strongly dependent on the applied functional. Results for the cluster models of [NiFe] hydrogenases lead to the conclusion that in the reduced protein structures characterized by X-ray diffraction a hydride bridges the two metal centres. The energy splitting of the singlet and triplet states in Ni-R and Ni-SI models is calculated to be very small and may be overcome at room temperature to allow a spin crossover. Moreover, the relative stability of the Ni-SI and Ni-R structures adopted in the present investigation is fully compatible with their involvement in the reversible heterolytic cleavage of H-2.
引用
收藏
页码:873 / 884
页数:12
相关论文
共 65 条
[1]   ELECTRONIC-STRUCTURE CALCULATIONS ON WORKSTATION COMPUTERS - THE PROGRAM SYSTEM TURBOMOLE [J].
AHLRICHS, R ;
BAR, M ;
HASER, M ;
HORN, H ;
KOLMEL, C .
CHEMICAL PHYSICS LETTERS, 1989, 162 (03) :165-169
[2]  
[Anonymous], 1995, ADV INORGANIC CHEM
[3]   INFRARED-DETECTABLE GROUPS SENSE CHANGES IN CHARGE-DENSITY ON THE NICKEL CENTER IN HYDROGENASE FROM CHROMATIUM-VINOSUM [J].
BAGLEY, KA ;
DUIN, EC ;
ROSEBOOM, W ;
ALBRACHT, SPJ ;
WOODRUFF, WH .
BIOCHEMISTRY, 1995, 34 (16) :5527-5535
[4]   INFRARED STUDIES ON THE INTERACTION OF CARBON-MONOXIDE WITH DIVALENT NICKEL IN HYDROGENASE FROM CHROMATIUM-VINOSUM [J].
BAGLEY, KA ;
VANGARDEREN, CJ ;
CHEN, M ;
DUIN, EC ;
ALBRACHT, SPJ ;
WOODRUFF, WH .
BIOCHEMISTRY, 1994, 33 (31) :9229-9236
[5]   DENSITY-FUNCTIONAL THERMOCHEMISTRY .1. THE EFFECT OF THE EXCHANGE-ONLY GRADIENT CORRECTION [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1992, 96 (03) :2155-2160
[6]   DENSITY-FUNCTIONAL THERMOCHEMISTRY .3. THE ROLE OF EXACT EXCHANGE [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (07) :5648-5652
[7]   DENSITY-FUNCTIONAL EXCHANGE-ENERGY APPROXIMATION WITH CORRECT ASYMPTOTIC-BEHAVIOR [J].
BECKE, AD .
PHYSICAL REVIEW A, 1988, 38 (06) :3098-3100
[8]   NICKEL AND IRON-SULFUR CENTERS IN DESULFOVIBRIO-GIGAS HYDROGENASE - ELECTRON-SPIN-RESONANCE SPECTRA, REDOX PROPERTIES AND INTERACTIONS [J].
CAMMACK, R ;
PATIL, DS ;
HATCHIKIAN, EC ;
FERNANDEZ, VM .
BIOCHIMICA ET BIOPHYSICA ACTA, 1987, 912 (01) :98-109
[9]   Transition metal mediated epoxidation as test case for the performance of different density functionals: A Computational Study [J].
Cavallo, L ;
Jacobsen, H .
JOURNAL OF PHYSICAL CHEMISTRY A, 2003, 107 (28) :5466-5471
[10]  
Cundari TR, 2001, COMPUTATIONAL ORGANOMETALLIC CHEMISTRY, P1