Comparison of real-time PCR methods for measurement of HIV-1 proviral DNA

被引:19
作者
Rozera, G. [1 ]
Abbate, I. [1 ]
Bruselles, A. [1 ]
Bartolini, B. [1 ]
D'Offizi, G. [1 ]
Nicastri, E. [1 ]
Tommasi, C. [1 ]
Capobianchi, M. R. [1 ]
机构
[1] INMI L Spallanzani, Rome, Italy
关键词
Proviral burden; Real-time PCR; Marker; Sequence; ACTIVE ANTIRETROVIRAL THERAPY; CD4 CELL COUNT; DISEASE PROGRESSION; LOAD; RNA; INFECTION; QUANTIFICATION; QUANTITATION; LEVEL;
D O I
10.1016/j.jviromet.2009.11.031
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The use of HIV-1 DNA quantitation in cellular reservoirs to predict disease progression and treatment outcome in infected patients is hampered by the lack of standardization among the available methods. In the present study, real-time PCR methods used commonly for HIV-1 proviral DNA evaluation were compared, showing strong differences in the results, probably as a consequence of genome variability in the target regions. Standardization of HIV-1 proviral DNA quantitation assays is needed for use in clinical management of patients with HIV-1. (C) 2010 Published by Elsevier B.V.
引用
收藏
页码:135 / 138
页数:4
相关论文
共 13 条
  • [1] Use of Massive Parallel Pyrosequencing for Near Full-Length Characterization of a Unique HIV Type 1 BF Recombinant Associated with a Fatal Primary Infection
    Bruselles, Alessandro
    Rozera, Gabriella
    Bartolini, Barbara
    Prosperi, Mattia
    Del Nonno, Franca
    Narciso, Pasquale
    Capobianchi, Maria R.
    Abbate, Isabella
    [J]. AIDS RESEARCH AND HUMAN RETROVIRUSES, 2009, 25 (09) : 937 - 942
  • [2] Quantification of human immunodeficiency virus type 1 proviral load by a TaqMan real-time PCR assay
    Désiré, N
    Dehée, A
    Schneider, V
    Jacomet, C
    Goujon, C
    Girard, PM
    Rozenbaum, W
    Nicolas, JC
    [J]. JOURNAL OF CLINICAL MICROBIOLOGY, 2001, 39 (04) : 1303 - 1310
  • [3] CD4 cell count and HIV DNA level are independent predictors of disease progression after primary HIV type 1 infection in untreated patients
    Goujard, C
    Bonarek, M
    Meyer, L
    Bonnet, F
    Chaix, ML
    Deveau, C
    Sinet, M
    Galimand, J
    Delfraissy, JF
    Venet, A
    Rouzioux, C
    Morlat, P
    [J]. CLINICAL INFECTIOUS DISEASES, 2006, 42 (05) : 709 - 715
  • [4] Cellular HIV-1 DNA load predicts HIV-RNA rebound and the outcome of highly active antiretroviral therapy
    Hatzakis, AE
    Touloumi, G
    Pantazis, N
    Anastassopoulou, CG
    Katsarou, O
    Karafoulidou, A
    Goedert, JJ
    Kostrikis, LG
    [J]. AIDS, 2004, 18 (17) : 2261 - 2267
  • [5] Quantitation of human immunodeficiency virus type 1 DNA forms with the second template switch in peripheral blood cells predicts disease progression independently of plasma RNA load
    Kostrikis, LG
    Touloumi, G
    Karanicolas, R
    Pantazis, N
    Anastassopoulou, C
    Karafoulidou, A
    Goedert, JJ
    Hatzakis, A
    [J]. JOURNAL OF VIROLOGY, 2002, 76 (20) : 10099 - 10108
  • [6] Plasma viral load and CD4(+) lymphocytes as prognostic markers of HIV-1 infection
    Mellors, JW
    Munoz, A
    Giorgi, JV
    Margolick, JB
    Tassoni, CJ
    Gupta, P
    Kingsley, LA
    Todd, JA
    Saah, AJ
    Detels, R
    Phair, JP
    Rinaldo, CR
    [J]. ANNALS OF INTERNAL MEDICINE, 1997, 126 (12) : 946 - 954
  • [7] Immune reconstitution in HIV-1-infected children on antiretroviral therapy: role of thymic output and viral fitness
    Ometto, L
    De Forni, D
    Patiri, F
    Trouplin, V
    Mammano, F
    Giacomet, V
    Giaquinto, C
    Douek, D
    Koup, R
    De Rossi, A
    [J]. AIDS, 2002, 16 (06) : 839 - 849
  • [8] Highly sensitive methods based on seminested real-time reverse transcription-PCR for quantitation of human immunodeficiency virus type 1 unspliced and multiply spliced RNA and proviral DNA
    Pasternak, Alexander O.
    Adema, Karen W.
    Bakker, Margreet
    Jurriaans, Suzanne
    Berkhout, Ben
    Cornelissen, Marion
    Lukashov, Vladimir V.
    [J]. JOURNAL OF CLINICAL MICROBIOLOGY, 2008, 46 (07) : 2206 - 2211
  • [9] Early levels of HIV-1 DNA in peripheral blood mononuclear cells are predictive of disease progression independently of HIV-1 RNA levels and CD4+ T cell counts
    Rouzioux, C
    Hubert, JB
    Burgard, M
    Deveau, C
    Goujard, C
    Bary, M
    Séréni, D
    Viard, JP
    Delfraissy, JF
    Meyer, L
    [J]. JOURNAL OF INFECTIOUS DISEASES, 2005, 192 (01) : 46 - 55
  • [10] Virological characterization of patients treated early is able to control HIV-1 replication after multiple cycles of structured therapy interruption
    Rozera, G.
    Abbate, I.
    D'Offizi, G.
    Corpolongo, A.
    Narciso, P.
    Vlassi, C.
    Martini, F.
    Calcaterra, S.
    Capobianchi, M. R.
    [J]. JOURNAL OF MEDICAL VIROLOGY, 2007, 79 (08) : 1047 - 1054