DendroPy: a Python']Python library for phylogenetic computing

被引：1264

作者：

Sukumaran, Jeet ^{[1
]}

Holder, Mark T. ^{[1
]}

机构：

[1] Univ Kansas, Dept Ecol & Evolutionary Biol, Lawrence, KS 66045 USA

来源：

BIOINFORMATICS | 2010年 / 26卷 / 12期

基金：

美国国家科学基金会;

关键词：

D O I：

10.1093/bioinformatics/btq228

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

DendroPy is a cross-platform library for the Python programming language that provides for object-oriented reading, writing, simulation and manipulation of phylogenetic data, with an emphasis on phylogenetic tree operations. DendroPy uses a splits-hash mapping to perform rapid calculations of tree distances, similarities and shape under various metrics. It contains rich simulation routines to generate trees under a number of different phylogenetic and coalescent models. DendroPy's data simulation and manipulation facilities, in conjunction with its support of a broad range of phylogenetic data formats (NEXUS, Newick, PHYLIP, FASTA, NeXML, etc.), allow it to serve a useful role in various phyloinformatics and phylogeographic pipelines.

引用

页码：1569 / 1571

页数：3

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