CM1-driven assembly and activation of yeast γ-tubulin small complex underlies microtubule nucleation

被引:22
作者
Brilot, Axel F. [1 ]
Lyon, Andrew S. [1 ,5 ,6 ]
Zelter, Alex [2 ]
Viswanath, Shruthi [3 ,7 ]
Maxwell, Alison [1 ]
MacCoss, Michael J. [4 ]
Muller, Eric G. [2 ]
Sali, Andrej [3 ]
Davis, Trisha N. [2 ]
Agard, David A. [1 ]
机构
[1] Univ Calif San Francisco, Dept Biochem & Biophys, San Francisco, CA 94143 USA
[2] Univ Washington, Dept Biochem, Seattle, WA 98195 USA
[3] Univ Calif San Francisco, Dept Bioengn & Therapeut Sci, San Francisco, CA 94143 USA
[4] Univ Washington, Dept Genome Sci, Seattle, WA 98195 USA
[5] Univ Texas Southwestern Med Ctr Dallas, Dept Biophys, Dallas, TX 75390 USA
[6] Univ Texas Southwestern Med Ctr Dallas, Howard Hughes Med Inst, Dallas, TX 75390 USA
[7] Tata Inst Fundamental Res, Natl Ctr Biol Sci, Bangalore, Karnataka, India
基金
美国国家科学基金会;
关键词
SPINDLE POLE BODY; BEAM-INDUCED MOTION; CRYO-EM; MOLECULAR ARCHITECTURE; INTEGRATIVE STRUCTURE; STRUCTURE REFINEMENT; MASS-SPECTROMETRY; CRYSTAL-STRUCTURE; RING; VISUALIZATION;
D O I
10.7554/eLife.65168
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Microtubule (MT) nucleation is regulated by the gamma-tubulin ring complex (gamma TuRC), conserved from yeast to humans. In Saccharomyces cerevisiae, gamma TuRC is composed of seven identical gamma-tubulin small complex (gamma TuSC) sub-assemblies, which associate helically to template MT growth. gamma TuRC assembly provides a key point of regulation for the MT cytoskeleton. Here, we combine crosslinking mass spectrometry, X-ray crystallography, and cryo-EM structures of both monomeric and dimeric gamma TuSCs, and open and closed helical gamma TuRC assemblies in complex with Spc110p to elucidate the mechanisms of gamma TuRC assembly. gamma TuRC assembly is substantially aided by the evolutionarily conserved CM1 motif in Spc110p spanning a pair of adjacent gamma TuSCs. By providing the highest resolution and most complete views of any gamma TuSC assembly, our structures allow phosphorylation sites to be mapped, surprisingly suggesting that they are mostly inhibitory. A comparison of our structures with the CM1 binding site in the human gamma TuRC structure at the interface between GCP2 and GCP6 allows for the interpretation of significant structural changes arising from CM1 helix binding to metazoan gamma TuRC.
引用
收藏
页数:35
相关论文
共 94 条
[1]   PHENIX: a comprehensive Python']Python-based system for macromolecular structure solution [J].
Adams, Paul D. ;
Afonine, Pavel V. ;
Bunkoczi, Gabor ;
Chen, Vincent B. ;
Davis, Ian W. ;
Echols, Nathaniel ;
Headd, Jeffrey J. ;
Hung, Li-Wei ;
Kapral, Gary J. ;
Grosse-Kunstleve, Ralf W. ;
McCoy, Airlie J. ;
Moriarty, Nigel W. ;
Oeffner, Robert ;
Read, Randy J. ;
Richardson, David C. ;
Richardson, Jane S. ;
Terwilliger, Thomas C. ;
Zwart, Peter H. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2010, 66 :213-221
[2]   Real-space refinement in PHENIX for cryo-EM and crystallography [J].
Afonine, Pavel V. ;
Poon, Billy K. ;
Read, Randy J. ;
Sobolev, Oleg V. ;
Terwilliger, Thomas C. ;
Urzhumtsev, Alexandre ;
Adams, Paul D. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2018, 74 :531-544
[3]   Towards automated crystallographic structure refinement with phenix.refine [J].
Afonine, Pavel V. ;
Grosse-Kunstleve, Ralf W. ;
Echols, Nathaniel ;
Headd, Jeffrey J. ;
Moriarty, Nigel W. ;
Mustyakimov, Marat ;
Terwilliger, Thomas C. ;
Urzhumtsev, Alexandre ;
Zwart, Peter H. ;
Adams, Paul D. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2012, 68 :352-367
[4]   Control of microtubule organization and dynamics: two ends in the limelight [J].
Akhmanova, Anna ;
Steinmetz, Michel O. .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2015, 16 (12) :711-726
[5]   Determining the architectures of macromolecular assemblies [J].
Alber, Frank ;
Dokudovskaya, Svetlana ;
Veenhoff, Liesbeth M. ;
Zhang, Wenzhu ;
Kipper, Julia ;
Devos, Damien ;
Suprapto, Adisetyantari ;
Karni-Schmidt, Orit ;
Williams, Rosemary ;
Chait, Brian T. ;
Rout, Michael P. ;
Sali, Andrej .
NATURE, 2007, 450 (7170) :683-694
[6]   Insights into microtubule nucleation from the crystal structure of human γ-tubulin [J].
Aldaz, H ;
Rice, LM ;
Stearns, T ;
Agard, DA .
NATURE, 2005, 435 (7041) :523-527
[7]   Design considerations in coiled-coil fusion constructs for the structural determination of a problematic region of the human cardiac myosin rod [J].
Andreas, Michael P. ;
Ajay, Gautam ;
Gellings, Jaclyn A. ;
Rayment, Ivan .
JOURNAL OF STRUCTURAL BIOLOGY, 2017, 200 (03) :219-228
[8]   Permutation testing of Fourier shell correlation for resolution estimation of cryo-EM maps [J].
Beckers, Maximilian ;
Sachse, Carsten .
JOURNAL OF STRUCTURAL BIOLOGY, 2020, 212 (01)
[9]   The yeast spindle pole body is assembled around a central crystal of Spc42p [J].
Bullitt, E ;
Rout, MP ;
Kilmartin, JV ;
Akey, CW .
CELL, 1997, 89 (07) :1077-1086
[10]   PDB-Dev: a Prototype System for Depositing Integrative/Hybrid Structural Models [J].
Burley, Stephen K. ;
Kurisu, Genji ;
Markley, John L. ;
Nakamura, Haruki ;
Velankar, Sameer ;
Berman, Helen M. ;
Sali, Andrej ;
Schwede, Torsten ;
Trewhella, Jill .
STRUCTURE, 2017, 25 (09) :1317-1318