Genome sequence of mungbean and insights into evolution within Vigna species

被引:382
作者
Kang, Yang Jae [1 ,2 ]
Kim, Sue K. [1 ,2 ]
Kim, Moon Young [1 ,2 ]
Lestari, Puji [1 ,2 ,3 ]
Kim, Kil Hyun [4 ]
Ha, Bo-Keun [5 ]
Jun, Tae Hwan [6 ]
Hwang, Won Joo [1 ,2 ]
Lee, Taeyoung [1 ,2 ]
Lee, Jayern [1 ,2 ]
Shim, Sangrea [1 ,2 ]
Yoon, Min Young [1 ,2 ]
Jang, Young Eun [1 ,2 ]
Han, Kwang Soo [1 ,2 ]
Taeprayoon, Puntaree [7 ]
Yoon, Na [1 ,2 ]
Somta, Prakit [7 ]
Tanya, Patcharin [7 ]
Kim, Kwang Soo [1 ,2 ]
Gwag, Jae-Gyun [8 ]
Moon, Jung-Kyung [4 ]
Lee, Yeong-Ho [1 ,2 ]
Park, Beom-Seok [9 ]
Bombarely, Aureliano [10 ]
Doyle, Jeffrey J. [10 ]
Jackson, Scott A. [11 ]
Schafleitner, Roland [12 ]
Srinives, Peerasak [7 ]
Varshney, Rajeev K. [13 ]
Lee, Suk-Ha [1 ,2 ,14 ]
机构
[1] Seoul Natl Univ, Dept Plant Sci, Seoul 151921, South Korea
[2] Seoul Natl Univ, Res Inst Agr & Life Sci, Seoul 151921, South Korea
[3] IAARD, Indonesian Ctr Agr Biotechnol & Genet Resources R, Bogor 16111, Indonesia
[4] Rural Dev Adm, Natl Inst Crop Sci, Upland Crop Div, Suwon 441770, South Korea
[5] Chonnam Natl Univ, Coll Agr & Life Sci, Div Plant Biotechnol, Kwangju 500757, South Korea
[6] Pusan Natl Univ, Coll Nat Resources & Life Sci, Dept Plant Biosci, Pusan 627706, South Korea
[7] Kasetsart Univ, Fac Agr Kamphaeng Saen, Dept Agron, Nakhon Pathom 73140, Thailand
[8] Natl Acad Agr Sci, Natl Agrobiodivers Ctr, Suwon 441707, South Korea
[9] Rural Dev Adm, Natl Acad Agr Sci, Agr Genome Ctr, Suwon 441707, South Korea
[10] Cornell Univ, Dept Plant Biol, LH Bailey Hortorium, Ithaca, NY 14853 USA
[11] Univ Georgia, Ctr Appl Genet Technol, Athens, GA 30602 USA
[12] Asian Vegetable Res & Dev Ctr, World Vegetable Ctr, Tainan 74199, Taiwan
[13] Int Crops Res Inst Semi Arid Trop, Ctr Excellence Genom, Hyderabad, Andhra Pradesh, India
[14] Seoul Natl Univ, Plant Genom & Breeding Inst, Seoul 151921, South Korea
关键词
RADIATA L. WILCZEK; EST DATABASES; WHOLE-GENOME; PROTEIN; DIVERSIFICATION; ANNOTATION; POLYPLOIDY; INFERENCE; ALIGNMENT; SOFTWARE;
D O I
10.1038/ncomms6443
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Mungbean (Vigna radiata) is a fast-growing, warm-season legume crop that is primarily cultivated in developing countries of Asia. Here we construct a draft genome sequence of mungbean to facilitate genome research into the subgenus Ceratotropis, which includes several important dietary legumes in Asia, and to enable a better understanding of the evolution of leguminous species. Based on the de novo assembly of additional wild mungbean species, the divergence of what was eventually domesticated and the sampled wild mungbean species appears to have predated domestication. Moreover, the de novo assembly of a tetraploid Vigna species (V. reflexo-pilosa var. glabra) provides genomic evidence of a recent allopolyploid event. The species tree is constructed using de novo RNA-seq assemblies of 22 accessions of 18 Vigna species and protein sets of Glycine max. The present assembly of V. radiata var. radiata will facilitate genome research and accelerate molecular breeding of the subgenus Ceratotropis.
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页数:9
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