Crystal structure of maize serine racemase with pyridoxal 5′-phosphate

被引:6
作者
Zou, Lingling [1 ]
Song, Yang [2 ]
Wang, Chengliang [2 ]
Sun, Jiaqi [1 ]
Wang, Leilei [1 ]
Cheng, Beijiu [1 ]
Fan, Jun [1 ]
机构
[1] Anhui Agr Univ, Sch Life Sci, Hefei 230036, Anhui, Peoples R China
[2] Univ Sci & Technol China, Sch Life Sci, Hefei 230027, Anhui, Peoples R China
来源
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS | 2016年 / 72卷
关键词
structural comparison; serine racemase; maize; crystal structure; cofactor; pyridoxal 5 '-phosphate; GENE; BINDING; ATP;
D O I
10.1107/S2053230X16000960
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Serine racemase (SR) is a pyridoxal 5'-phosphate (PLP)-dependent enzyme that is responsible for D-serine biosynthesis in vivo. The first X-ray crystal structure of maize SR was determined to 2.1 angstrom resolution and PLP binding was confirmed in solution by UV-Vis absorption spectrometry. Maize SR belongs to the type II PLP-dependent enzymes and differs from the SR of a vancomycin-resistant bacterium. The PLP is bound to each monomer by forming a Schiff base with Lys67. Structural comparison with rat and fission yeast SRs reveals a similar arrangement of active-site residues but a different orientation of the C-terminal helix.
引用
收藏
页码:165 / 171
页数:7
相关论文
共 23 条
[1]   Characterization and modelling of VanT:: a novel, membrane-bound, serine racemase from vancomycin-resistant Enterococcus gallinarum BM4174 [J].
Arias, CA ;
Martín-Martinez, M ;
Blundell, TL ;
Arthur, M ;
Courvalin, P ;
Reynolds, PE .
MOLECULAR MICROBIOLOGY, 1999, 31 (06) :1653-1664
[2]   A vanG-type locus in Clostridium argentinense [J].
Berthet, Nicolas ;
Perichon, Bruno ;
Mazuet, Christelle ;
Chapeton-Montes, Diana ;
Bouchier, Christiane ;
Bouvet, Philippe ;
Legeay, Christine ;
Popoff, Michel-Robert ;
Courvalin, Patrice .
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 2015, 70 (07) :1942-1945
[3]   Coot:: model-building tools for molecular graphics [J].
Emsley, P ;
Cowtan, K .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2004, 60 :2126-2132
[4]   The dsdA gene from Escherichia coli provides a novel selectable marker for plant transformation [J].
Erikson, O ;
Hertzberg, M ;
Näsholm, T .
PLANT MOLECULAR BIOLOGY, 2005, 57 (03) :425-433
[5]   Molecular and biochemical characterization of a serine racemase from Arabidopsis thaliana [J].
Fujitani, Y ;
Nakajima, N ;
Ishihara, K ;
Oikawa, T ;
Ito, K ;
Sugimoto, M .
PHYTOCHEMISTRY, 2006, 67 (07) :668-674
[6]   Serine racemases from barley, Hordeum vulgare L., and other plant species represent a distinct eukaryotic group:: Gene cloning and recombinant protein characterization [J].
Fujitani, Yoshiyuki ;
Horiuchi, Terumi ;
Ito, Kazutoshi ;
Sugimoto, Manabu .
PHYTOCHEMISTRY, 2007, 68 (11) :1530-1536
[7]   Occurrence of D-serine in rice and characterization of rice serine racemase [J].
Gogami, Yoshitaka ;
Ito, Katsuyoshi ;
Kamitani, Yuji ;
Matsushima, Yuki ;
Oikawa, Tadao .
PHYTOCHEMISTRY, 2009, 70 (03) :380-387
[8]   Crystal Structure of a Homolog of Mammalian Serine Racemase from Schizosaccharomyces pombe [J].
Goto, Masaru ;
Yamauchi, Takae ;
Kamiya, Nobuo ;
Miyahara, Ikuko ;
Yoshimura, Tohru ;
Mihara, Hisaaki ;
Kurihara, Tatsuo ;
Hirotsu, Ken ;
Esaki, Nobuyoshi .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2009, 284 (38) :25944-25952
[9]   ESPript/ENDscript: extracting and rendering sequence and 3D information from atomic structures of proteins [J].
Gouet, P ;
Robert, X ;
Courcelle, E .
NUCLEIC ACIDS RESEARCH, 2003, 31 (13) :3320-3323
[10]   Analysis of chiral amino acids in conventional and transgenic maize [J].
Herrero, Miguel ;
Ibanez, Elena ;
Martin-Alvarez, Pedro J. ;
Cifuentes, Alejandro .
ANALYTICAL CHEMISTRY, 2007, 79 (13) :5071-5077