Estimation of the incubation period of COVID-19 using viral load data

被引:39
作者
Ejima, Keisuke [1 ]
Kim, Kwang Su [2 ]
Ludema, Christina [1 ]
Bento, Ana, I [1 ]
Iwanami, Shoya [2 ]
Fujita, Yasuhisa [2 ]
Ohashi, Hirofumi [3 ,4 ]
Koizumi, Yoshiki [5 ]
Watashi, Koichi [3 ,4 ,6 ,7 ]
Aihara, Kazuyuki [8 ]
Nishiura, Hiroshi [9 ]
Iwami, Shingo [2 ,6 ,10 ,11 ,12 ]
机构
[1] Indiana Univ, Dept Epidemiol & Biostat, Sch Publ Hlth, Bloomington, IN USA
[2] Kyushu Univ, Fac Sci, Dept Biol, Fukuoka, Japan
[3] Natl Inst Infect Dis, Dept Virol 2, Tokyo, Japan
[4] Tokyo Univ Sci, Dept Appl Biol Sci, Noda, Chiba, Japan
[5] Natl Ctr Global Hlth & Med, Tokyo, Japan
[6] JST, MIRAI, Saitama, Japan
[7] Kyoto Univ, Inst Frontier Life & Med Sci, Kyoto, Japan
[8] Univ Tokyo, Int Res Ctr Neurointelligence, Tokyo, Japan
[9] Hokkaido Univ, Grad Sch Med, Sapporo, Hokkaido, Japan
[10] Kyoto Univ, Inst Adv Study Human Biol ASHBi, Kyoto, Japan
[11] Japanese Fdn Canc Res JFCR, NEXT Ganken Program, Tokyo, Japan
[12] Sci Groove Inc, Fukuoka, Japan
基金
新加坡国家研究基金会;
关键词
SARS-CoV-2; COVID-19; Mathematical model; Infectious disease epidemiology; Incubation period; INFECTIONS;
D O I
10.1016/j.epidem.2021.100454
中图分类号
R51 [传染病];
学科分类号
100401 ;
摘要
The incubation period, or the time from infection to symptom onset, of COVID-19 has usually been estimated by using data collected through interviews with cases and their contacts. However, this estimation is influenced by uncertainty in the cases' recall of exposure time. We propose a novel method that uses viral load data collected over time since hospitalization, hindcasting the timing of infection with a mathematical model for viral dynamics. As an example, we used reported data on viral load for 30 hospitalized patients from multiple countries (Singapore, China, Germany, and Korea) and estimated the incubation period. The median, 2.5, and 97.5 percentiles of the incubation period were 5.85 days (95 % CI: 5.05, 6.77), 2.65 days (2.04, 3.41), and 12.99 days (9.98, 16.79), respectively, which are comparable to the values estimated in previous studies. Using viral load to estimate the incubation period might be a useful approach, especially when it is impractical to directly observe the infection event.
引用
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页数:6
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