Exome sequencing reveals novel mutation targets in diffuse large B-cell lymphomas derived from Chinese patients

被引:107
作者
de Miranda, Noel F. C. C. [1 ]
Georgiou, Konstantinos [1 ]
Chen, Longyun [2 ]
Wu, Chenglin [1 ]
Gao, Zhibo [2 ]
Zaravinos, Apostolos [1 ]
Lisboa, Susana [3 ,4 ]
Enblad, Gunilla [5 ]
Teixeira, Manuel R. [3 ,4 ]
Zeng, Yixin [6 ,7 ]
Peng, Roujun [6 ,7 ]
Pan-Hammarstrom, Qiang [1 ,6 ,7 ,8 ,9 ]
机构
[1] Karolinska Univ Hosp, Karolinska Inst, Dept Lab Med, Huddinge, Sweden
[2] Beijing Genom Inst Shenzhen, Dept Med Sci Res, Shenzhen, Peoples R China
[3] Univ Porto, Portuguese Oncol Inst, Dept Genet, P-4100 Oporto, Portugal
[4] Univ Porto, Abel Salazar Biomed Sci Inst, P-4100 Oporto, Portugal
[5] Uppsala Univ, Dept Radiol Oncol & Radiat Sci, Uppsala, Sweden
[6] Sun Yat Sen Univ, Ctr Canc, State Key Lab Oncol South China, Dept Med Oncol, Guangzhou 510060, Guangdong, Peoples R China
[7] Collaborat Innovat Ctr Canc Med, Guangzhou, Guangdong, Peoples R China
[8] Guangzhou Inst Resp Dis, Guangzhou, Guangdong, Peoples R China
[9] China State Key Lab Resp Dis, Guangzhou, Guangdong, Peoples R China
基金
中国国家自然科学基金; 欧洲研究理事会; 瑞典研究理事会;
关键词
SOMATIC MUTATIONS; CODING GENOME; GENES; NOTCH; LYN; EXPRESSION; FREQUENT; MICE; HYPERMUTATION; INACTIVATION;
D O I
10.1182/blood-2013-12-546309
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Next-generation sequencing studies on diffuse large B-cell lymphomas (DLBCLs) have revealed novel targets of genetic aberrations but also high intercohort heterogeneity. Previous studies have suggested that the prevalence of disease subgroups and cytogenetic profiles differ between Western and Asian patients. To characterize the coding genome of Chinese DLBCL, we performed whole-exome sequencing of DNA derived from 31 tumors and respective peripheral blood samples. The mutation prevalence of B2M, CD70, DTX1, LYN, TMSB4X, and UBE2A was investigated in an additional 105 tumor samples. We discovered 11 novel targets of recurrent mutations in DLBCL that included functionally relevant genes such as LYN and TMSB4X. Additional genes were found mutated at high frequency (>= 10%) in the Chinese cohort including DTX1, which was the most prevalent mutation target in the Notch pathway. We furthermore demonstrated that mutations in DTX1 impair its function as a negative regulator of Notch. Novel and previous unappreciated targets of somatic mutations in DLBCL identified in this study support the existence of additional/alternative tumorigenic pathways in these tumors. The observed differences with previous reports might be explained by the genetic heterogeneity of DLBCL, the germline genetic makeup of Chinese individuals, and/or exposure to distinct etiological agents.
引用
收藏
页码:2544 / 2553
页数:10
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