How protein surfaces induce anomalous dynamics of hydration water

被引:217
作者
Pizzitutti, Francesco
Marchi, Massimo
Sterpone, Fabio
Rossky, Peter J.
机构
[1] CEA, DSV DBJC SBFM, Ctr Etudes, F-91191 Gif Sur Yvette, France
[2] Univ Texas, Dept Chem & Biochem, Austin, TX 78712 USA
关键词
POLAR SOLVATION DYNAMICS; MOLECULAR-DYNAMICS; ROTATIONAL RELAXATION; REVERSE MICELLES; SIMULATIONS; DIFFUSION; SOLVENT; BEHAVIOR; PENETRATION; SENSITIVITY;
D O I
10.1021/jp0717185
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Water around biomolecules slows down with respect to pure water, and both rotation and translation exhibit anomalous time dependence in the hydration shell. The origin of such behavior remains elusive. We use molecular dynamics simulations of water dynamics around several designed protein models to establish the connection between the appearance of the anomalous dynamics and water-protein interactions. For the first time we quantify the separate effect of protein topological and energetic disorder on the hydration water dynamics. When a static protein structure is simulated, we show that both types of disorder contribute to slow down water diffusion, and that allowing for protein motion, increasing the spatial dimentionality of the interface, reduces the anomalous character of hydration water. The rotation of water is, instead, altered by the energetic disorder only; indeed, when electrostatic interactions between the protein and water are switched off, water reorients even faster than in the bulk. The dynamics of water is also related to the collective structurea voir the hydrogen bond (H-bond) networkformed by the solvent enclosing the protein surface. We show that, as expected for a full hydrated protein, when the protein surface offers pinning sites (charged or polar sites), the superficial water-water H-bond network percolates throughout the whole surface, hindering the water diffusion, whereas it does not when the protein surface lacks electrostatic interactions with water and the water diffusion is enhanced.
引用
收藏
页码:7584 / 7590
页数:7
相关论文
共 52 条
[1]   Molecular modeling and simulations of AOT-Water reverse micelles in isooctane: Structural and dynamic properties [J].
Abel, S ;
Sterpone, F ;
Bandyopadhyay, S ;
Marchi, M .
JOURNAL OF PHYSICAL CHEMISTRY B, 2004, 108 (50) :19458-19466
[2]   Water dynamics in the hydration layer around proteins and micelles [J].
Bagchi, B .
CHEMICAL REVIEWS, 2005, 105 (09) :3197-3219
[3]   Slow solvation dynamics near an aqueous micellar surface [J].
Balasubramanian, S ;
Bagchi, B .
JOURNAL OF PHYSICAL CHEMISTRY B, 2001, 105 (50) :12529-12533
[4]   Secondary structure sensitivity of hydrogen bond lifetime dynamics in the protein hydration layer [J].
Bandyopadhyay, S ;
Chakraborty, S ;
Bagchi, B .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (47) :16660-16667
[5]   Sensitivity of polar solvation dynamics to the secondary structures of aqueous proteins and the role of surface exposure of the probe [J].
Bandyopadhyay, S ;
Chakraborty, S ;
Balasubramanian, S ;
Bagchi, B .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (11) :4071-4075
[6]   Exploration of the secondary structure specific differential solvation dynamics between the native and molten globule states of the protein HP-36 [J].
Bandyopadhyay, Sanjoy ;
Chakraborty, Sudip ;
Bagchi, Biman .
JOURNAL OF PHYSICAL CHEMISTRY B, 2006, 110 (41) :20629-20634
[7]   THE MISSING TERM IN EFFECTIVE PAIR POTENTIALS [J].
BERENDSEN, HJC ;
GRIGERA, JR ;
STRAATSMA, TP .
JOURNAL OF PHYSICAL CHEMISTRY, 1987, 91 (24) :6269-6271
[8]   Molecular dynamics of water at the protein-solvent interface [J].
Bizzarri, AR ;
Cannistraro, S .
JOURNAL OF PHYSICAL CHEMISTRY B, 2002, 106 (26) :6617-6633
[9]   Glasslike dynamical behavior of the plastocyanin hydration water [J].
Bizzarri, AR ;
Paciaroni, A ;
Cannistraro, S .
PHYSICAL REVIEW E, 2000, 62 (03) :3991-3999
[10]   Concentration dependence of water dynamics in poly(ethylene oxide)/water solutions from molecular dynamics simulations [J].
Borodin, O ;
Bedrov, D ;
Smith, GD .
JOURNAL OF PHYSICAL CHEMISTRY B, 2002, 106 (20) :5194-5199