Water around biomolecules slows down with respect to pure water, and both rotation and translation exhibit anomalous time dependence in the hydration shell. The origin of such behavior remains elusive. We use molecular dynamics simulations of water dynamics around several designed protein models to establish the connection between the appearance of the anomalous dynamics and water-protein interactions. For the first time we quantify the separate effect of protein topological and energetic disorder on the hydration water dynamics. When a static protein structure is simulated, we show that both types of disorder contribute to slow down water diffusion, and that allowing for protein motion, increasing the spatial dimentionality of the interface, reduces the anomalous character of hydration water. The rotation of water is, instead, altered by the energetic disorder only; indeed, when electrostatic interactions between the protein and water are switched off, water reorients even faster than in the bulk. The dynamics of water is also related to the collective structurea voir the hydrogen bond (H-bond) networkformed by the solvent enclosing the protein surface. We show that, as expected for a full hydrated protein, when the protein surface offers pinning sites (charged or polar sites), the superficial water-water H-bond network percolates throughout the whole surface, hindering the water diffusion, whereas it does not when the protein surface lacks electrostatic interactions with water and the water diffusion is enhanced.
机构:
Univ Roma Tre, Dipartimento Matemat & Fis, Via Vasca Navale 84, I-00146 Rome, Italy
Stockholm Univ, Phys Dept, Stockholm, SwedenUniv Roma Tre, Dipartimento Matemat & Fis, Via Vasca Navale 84, I-00146 Rome, Italy
Camisasca, Gaia
Iorio, Antonio
论文数: 0引用数: 0
h-index: 0
机构:
Univ Roma Tre, Dipartimento Matemat & Fis, Via Vasca Navale 84, I-00146 Rome, ItalyUniv Roma Tre, Dipartimento Matemat & Fis, Via Vasca Navale 84, I-00146 Rome, Italy
Iorio, Antonio
De Marzio, Margherita
论文数: 0引用数: 0
h-index: 0
机构:
Univ Roma Tre, Dipartimento Matemat & Fis, Via Vasca Navale 84, I-00146 Rome, ItalyUniv Roma Tre, Dipartimento Matemat & Fis, Via Vasca Navale 84, I-00146 Rome, Italy
De Marzio, Margherita
Gallo, Paola
论文数: 0引用数: 0
h-index: 0
机构:
Univ Roma Tre, Dipartimento Matemat & Fis, Via Vasca Navale 84, I-00146 Rome, ItalyUniv Roma Tre, Dipartimento Matemat & Fis, Via Vasca Navale 84, I-00146 Rome, Italy
机构:
Chinese Acad Sci, CIAC, Key Lab High Performance Synthet Rubber & Its Com, Changchun 130022, Jilin, Peoples R ChinaChinese Acad Sci, CIAC, Key Lab High Performance Synthet Rubber & Its Com, Changchun 130022, Jilin, Peoples R China
Cui, Fengchao
Chen, Wenduo
论文数: 0引用数: 0
h-index: 0
机构:
Chinese Acad Sci, CIAC, Key Lab High Performance Synthet Rubber & Its Com, Changchun 130022, Jilin, Peoples R China
Sun Yat Sen Univ, Sch Mat, 135 Xingang West, Guangzhou 510275, Guangdong, Peoples R ChinaChinese Acad Sci, CIAC, Key Lab High Performance Synthet Rubber & Its Com, Changchun 130022, Jilin, Peoples R China
Chen, Wenduo
Kong, Xiangxin
论文数: 0引用数: 0
h-index: 0
机构:
Chinese Acad Sci, CIAC, Key Lab High Performance Synthet Rubber & Its Com, Changchun 130022, Jilin, Peoples R ChinaChinese Acad Sci, CIAC, Key Lab High Performance Synthet Rubber & Its Com, Changchun 130022, Jilin, Peoples R China
Kong, Xiangxin
Liu, Lunyang
论文数: 0引用数: 0
h-index: 0
机构:
Chinese Acad Sci, CIAC, Key Lab High Performance Synthet Rubber & Its Com, Changchun 130022, Jilin, Peoples R ChinaChinese Acad Sci, CIAC, Key Lab High Performance Synthet Rubber & Its Com, Changchun 130022, Jilin, Peoples R China
Liu, Lunyang
Shi, Ce
论文数: 0引用数: 0
h-index: 0
机构:
Chinese Acad Sci, CIAC, Key Lab High Performance Synthet Rubber & Its Com, Changchun 130022, Jilin, Peoples R ChinaChinese Acad Sci, CIAC, Key Lab High Performance Synthet Rubber & Its Com, Changchun 130022, Jilin, Peoples R China
Shi, Ce
Li, Yunqi
论文数: 0引用数: 0
h-index: 0
机构:
Chinese Acad Sci, CIAC, Key Lab High Performance Synthet Rubber & Its Com, Changchun 130022, Jilin, Peoples R ChinaChinese Acad Sci, CIAC, Key Lab High Performance Synthet Rubber & Its Com, Changchun 130022, Jilin, Peoples R China
机构:
RIKEN, Adv Inst Computat Sci, Chuo Ku, Kobe, Hyogo 6500047, JapanRIKEN, Quantitat Biol Ctr, Chuo Ku, Kobe, Hyogo 6500047, Japan
Harada, Ryuhei
Sugita, Yuji
论文数: 0引用数: 0
h-index: 0
机构:
RIKEN, Quantitat Biol Ctr, Chuo Ku, Kobe, Hyogo 6500047, Japan
RIKEN, Adv Inst Computat Sci, Chuo Ku, Kobe, Hyogo 6500047, Japan
RIKEN, Adv Sci Inst, Wako, Saitama 3510198, JapanRIKEN, Quantitat Biol Ctr, Chuo Ku, Kobe, Hyogo 6500047, Japan
Sugita, Yuji
Feig, Michael
论文数: 0引用数: 0
h-index: 0
机构:
RIKEN, Quantitat Biol Ctr, Chuo Ku, Kobe, Hyogo 6500047, Japan
Michigan State Univ, Dept Biochem & Mol Biol, E Lansing, MI 48824 USA
Michigan State Univ, Dept Chem, E Lansing, MI 48824 USARIKEN, Quantitat Biol Ctr, Chuo Ku, Kobe, Hyogo 6500047, Japan