Detection of Lung Contour with Closed Principal Curve and Machine Learning

被引:32
作者
Peng, Tao [1 ]
Wang, Yihuai [1 ]
Xu, Thomas Canhao [1 ]
Shi, Lianmin [1 ]
Jiang, Jianwu [1 ]
Zhu, Shilang [1 ]
机构
[1] Soochow Univ, Sch Comp Sci & Technol, 1 Shizi Rd, Suzhou 215006, Jiangsu, Peoples R China
基金
美国国家科学基金会;
关键词
Lung contour; Principal curve; Closed polygonal line algorithm; Machine learning; CONVOLUTIONAL NEURAL-NETWORKS; AUTOMATIC DETECTION; PULMONARY NODULES; ACTIVE CONTOUR; LEAST-SQUARES; SEGMENTATION; SHAPE; CLASSIFICATION; REPRESENTATION; APPROXIMATION;
D O I
10.1007/s10278-018-0058-y
中图分类号
R8 [特种医学]; R445 [影像诊断学];
学科分类号
1002 ; 100207 ; 1009 ;
摘要
Radiation therapy plays an essential role in the treatment of cancer. In radiation therapy, the ideal radiation doses are delivered to the observed tumor while not affecting neighboring normal tissues. In three-dimensional computed tomography (3D-CT) scans, the contours of tumors and organs-at-risk (OARs) are often manually delineated by radiologists. The task is complicated and time-consuming, and the manually delineated results will be variable from different radiologists. We propose a semi-supervised contour detection algorithm, which firstly uses a few points of region of interest (ROD as an approximate initialization. Then the data sequences are achieved by the closed polygonal line (CPL) algorithm, where the data sequences consist of the ordered projection indexes and the corresponding initial points. Finally, the smooth lung contour can be obtained, when the data sequences are trained by the backpropagation neural network model (BNNM). We use the private clinical dataset and the public Lung Image Database Consortium and Image Database Resource Initiative (LIDC-IDRI) &Inset to measure the accuracy of the presented method, respectively. To the private dataset, experimental results on the initial points which are as low as 15% of the manually delineated points show that the Dice coefficient reaches up to 0.95 and the global error is as low as 1.47 x 10(-2). The performance of the proposed algorithm is also better than the cubic spline interpolation (CSI) algorithm. While on the public LIDC-IDRI dataset, our method achieves superior segmentation performance with average Dice of 0.83.
引用
收藏
页码:520 / 533
页数:14
相关论文
共 49 条
[1]   An Integrated Region-, Boundary-, Shape-Based Active Contour for Multiple Object Overlap Resolution in Histological Imagery [J].
Ali, Sahirzeeshan ;
Madabhushi, Anant .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2012, 31 (07) :1448-1460
[2]   Detecting the Optic Disc Boundary in Digital Fundus Images Using Morphological, Edge Detection, and Feature Extraction Techniques [J].
Aquino, Arturo ;
Emilio Gegundez-Arias, Manuel ;
Marin, Diego .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2010, 29 (11) :1860-1869
[3]   The Lung Image Database Consortium, (LIDC) and Image Database Resource Initiative (IDRI): A Completed Reference Database of Lung Nodules on CT Scans [J].
Armato, Samuel G., III ;
McLennan, Geoffrey ;
Bidaut, Luc ;
McNitt-Gray, Michael F. ;
Meyer, Charles R. ;
Reeves, Anthony P. ;
Zhao, Binsheng ;
Aberle, Denise R. ;
Henschke, Claudia I. ;
Hoffman, Eric A. ;
Kazerooni, Ella A. ;
MacMahon, Heber ;
van Beek, Edwin J. R. ;
Yankelevitz, David ;
Biancardi, Alberto M. ;
Bland, Peyton H. ;
Brown, Matthew S. ;
Engelmann, Roger M. ;
Laderach, Gary E. ;
Max, Daniel ;
Pais, Richard C. ;
Qing, David P-Y ;
Roberts, Rachael Y. ;
Smith, Amanda R. ;
Starkey, Adam ;
Batra, Poonam ;
Caligiuri, Philip ;
Farooqi, Ali ;
Gladish, Gregory W. ;
Jude, C. Matilda ;
Munden, Reginald F. ;
Petkovska, Iva ;
Quint, Leslie E. ;
Schwartz, Lawrence H. ;
Sundaram, Baskaran ;
Dodd, Lori E. ;
Fenimore, Charles ;
Gur, David ;
Petrick, Nicholas ;
Freymann, John ;
Kirby, Justin ;
Hughes, Brian ;
Casteele, Alessi Vande ;
Gupte, Sangeeta ;
Sallam, Maha ;
Heath, Michael D. ;
Kuhn, Michael H. ;
Dharaiya, Ekta ;
Burns, Richard ;
Fryd, David S. .
MEDICAL PHYSICS, 2011, 38 (02) :915-931
[4]   Contour-based shape representation using principal curves [J].
Ataer-Cansizoglu, Esra ;
Bas, Erhan ;
Kalpathy-Cramer, Jayashree ;
Sharp, Greg C. ;
Erdogmus, Deniz .
PATTERN RECOGNITION, 2013, 46 (04) :1140-1150
[5]   Automatic Detection and Segmentation of Lymph Nodes From CT Data [J].
Barbu, Adrian ;
Suehling, Michael ;
Xu, Xun ;
Liu, David ;
Zhou, S. Kevin ;
Comaniciu, Dorin .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2012, 31 (02) :240-250
[6]   Segmentation of Vasculature From Fluorescently Labeled Endothelial Cells in Multi-Photon Microscopy Images [J].
Bates, Russell ;
Irving, Benjamin ;
Markelc, Bostjan ;
Kaeppler, Jakob ;
Brown, Graham ;
Muschel, Ruth J. ;
Brady, Sir Michael ;
Grau, Vicente ;
Schnabel, Julia A. .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2019, 38 (01) :1-10
[7]   Post-processing techniques for making reliable measurements from curve-skeletons [J].
Bradley, Robert S. ;
Withers, Philip J. .
COMPUTERS IN BIOLOGY AND MEDICINE, 2016, 72 :120-131
[8]   Deep 3D Convolutional Encoder Networks With Shortcuts for Multiscale Feature Integration Applied to Multiple Sclerosis Lesion Segmentation [J].
Brosch, Tom ;
Tang, Lisa Y. W. ;
Yoo, Youngjin ;
Li, David K. B. ;
Traboulsee, Anthony ;
Tam, Roger .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2016, 35 (05) :1229-1239
[9]   A novel approach of lung segmentation on chest CT images using graph cuts [J].
Dai, Shuangfeng ;
Lu, Ke ;
Dong, Jiyang ;
Zhang, Yifei ;
Chen, Yong .
NEUROCOMPUTING, 2015, 168 :799-807
[10]   Progressive and iterative approximation for least squares B-spline curve and surface fitting [J].
Deng, Chongyang ;
Lin, Hongwei .
COMPUTER-AIDED DESIGN, 2014, 47 :32-44