Tension dynamics in semiflexible polymers. I. Coarse-grained equations of motion

被引:47
|
作者
Hallatschek, Oskar [1 ]
Frey, Erwin
Kroy, Klaus
机构
[1] Harvard Univ, Lyman Lab Phys, Cambridge, MA 02138 USA
[2] Univ Munich, Arnold Sommerfeld Ctr Theoret Phys, D-800333 Munich, Germany
[3] Univ Munich, Ctr NanoSci, D-800333 Munich, Germany
[4] Univ Leipzig, Inst Theoret Phys, D-04109 Leipzig, Germany
关键词
D O I
10.1103/PhysRevE.75.031905
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
Based on the wormlike chain model, a coarse-grained description of the nonlinear dynamics of a weakly bending semiflexible polymer is developed. By means of a multiple-scale perturbation analysis, a length-scale separation inherent to the weakly bending limit is exploited to reveal the deterministic nature of the spatio temporal relaxation of the backbone tension and to deduce the corresponding coarse-grained equation of motion. From this partial integro-differential equation, some detailed analytical predictions for the nonlinear response of a weakly bending polymer are derived in an accompanying paper [O. Hallatschek , following paper, Phys. Rev. E 75, 031906 (2007)].
引用
收藏
页数:14
相关论文
共 50 条
  • [1] A Predictive Coarse-Grained Model for Semiflexible Polymers in Specific Solvents
    Shie, Sheng C.
    Lee, Cheng K.
    Hua, Chi C.
    Chen, Show A.
    MACROMOLECULAR THEORY AND SIMULATIONS, 2010, 19 (04) : 179 - 189
  • [2] A general method for the derivation of the functional forms of the effective energy terms in coarse-grained energy functions of polymers. I. Backbone potentials of coarse-grained polypeptide chains
    Sieradzan, Adam K.
    Makowski, Mariusz
    Augustynowicz, Antoni
    Liwo, Adam
    JOURNAL OF CHEMICAL PHYSICS, 2017, 146 (12):
  • [3] Dynamics of polymers in coarse-grained nematic solvents
    Valei, Zahra K.
    Wamsler, Karolina
    Parker, Alex J.
    Obara, Therese A.
    Klotz, Alexander R.
    Shendruk, Tyler N.
    SOFT MATTER, 2025, 21 (03)
  • [4] Coarse-grained molecular dynamics simulation of polymers: Structures and dynamics
    Shi, Rui
    Qian, Hu-Jun
    Lu, Zhong-Yuan
    WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE, 2023, 13 (06)
  • [5] Why are coarse-grained force fields too fast? A look at dynamics of four coarse-grained polymers
    Depa, Praveen
    Chen, Chunxia
    Maranas, Janna K.
    JOURNAL OF CHEMICAL PHYSICS, 2011, 134 (01):
  • [6] Tension dynamics in semiflexible polymers. II. Scaling solutions and applications
    Hallatschek, Oskar
    Frey, Erwin
    Kroy, Klaus
    PHYSICAL REVIEW E, 2007, 75 (03):
  • [7] Solving the equations of motion for mixed atomistic and coarse-grained systems
    Park, Jong Hyuk
    Heyden, Andreas
    MOLECULAR SIMULATION, 2009, 35 (10-11) : 962 - 973
  • [8] REVLD: A coarse-grained model for polymers
    Bailey, A. G.
    Lowe, C. P.
    Sutton, A. P.
    COMPUTER PHYSICS COMMUNICATIONS, 2009, 180 (04) : 594 - 599
  • [9] Coarse-grained forms for equations describing the microscopic motion of particles in a fluid
    Das, Shankar P.
    Yoshimori, Akira
    PHYSICAL REVIEW E, 2013, 88 (04):
  • [10] Understanding dynamics in coarse-grained models. III. Roles of rotational motion and translation-rotation coupling in coarse-grained dynamics
    Jin, Jaehyeok
    Lee, Eok Kyun
    Voth, Gregory A.
    JOURNAL OF CHEMICAL PHYSICS, 2023, 159 (16):