Exothermicity Is Not a Necessary Condition for Enhanced Diffusion of Enzymes

被引:79
作者
Illien, Pierre [1 ,2 ]
Zhao, Xi [2 ]
Dey, Krishna K. [2 ,4 ]
Butler, Peter J. [3 ]
Sen, Ayusman [2 ]
Golestanian, Ramin [1 ]
机构
[1] Univ Oxford, Rudolf Peierls Ctr Theoret Phys, Oxford OX1 3NP, England
[2] Penn State Univ, Dept Chem, University Pk, PA 16802 USA
[3] Penn State Univ, Dept Biomed Engn, University Pk, PA 16802 USA
[4] Indian Inst Technol Gandhinagar, Palaj Campus, Gandhinagar 382355, Gujarat, India
关键词
Enzymes; catalysis; diffusion; conformational changes; hydrodynamic interactions; RABBIT MUSCLE; ALDOLASE; CATALYSIS; MACHINES; DYNAMICS;
D O I
10.1021/acs.nanolett.7b01502
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Recent experiments have revealed that the diffusivity of exothermic and fast enzymes is enhanced when they are catalytically active, and different physical mechanisms have been explored and quantified to account for this observation. We perform measurements on the endothermic and relatively slow enzyme aldolase, which also shows substrate-induced enhanced diffusion. We propose a new physical paradigm, which reveals that the diffusion coefficient of a model enzyme hydrodynamically coupled to its environment increases significantly when undergoing changes in conformational fluctuations in a substrate concentration dependent manner, and is independent of the overall turnover rate of the underlying enzymatic reaction. Our results show that substrate induced enhanced diffusion of enzyme molecules can be explained within an equilibrium picture and that the exothermicity of the catalyzed reaction is not a necessary condition for the observation of this phenomenon.
引用
收藏
页码:4415 / 4420
页数:6
相关论文
共 32 条
[1]  
Alberts B., 2014, Molecular Biology of the Cell: Sixth International Student Edition
[2]   On the hydrodynamics of swimming enzymes [J].
Bai, Xiaoyu ;
Wolynes, Peter G. .
JOURNAL OF CHEMICAL PHYSICS, 2015, 143 (16)
[3]   CHEMICAL MODIFICATION OF FRUCTOSE BISPHOSPHATE ALDOLASE FROM TRYPANOSOMA-BRUCEI COMPARED TO ALDOLASE FROM RABBIT MUSCLE AND STAPHYLOCOCCUS-AUREUS [J].
CALLENS, M ;
OPPERDOES, FR .
MOLECULAR AND BIOCHEMICAL PARASITOLOGY, 1991, 47 (01) :11-17
[4]   A mesoscopic model for protein enzymatic dynamics in solution [J].
Echeverria, Carlos ;
Togashi, Yuichi ;
Mikhailov, Alexander S. ;
Kapral, Raymond .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2011, 13 (22) :10527-10537
[6]   Thermodynamics of enzyme-catalyzed reactions .4. Lyases [J].
Goldberg, RN ;
Tewari, YB .
JOURNAL OF PHYSICAL AND CHEMICAL REFERENCE DATA, 1995, 24 (05) :1669-1698
[7]   Mechanical response of a small swimmer driven by conformational transitions [J].
Golestanian, Ramin ;
Ajdari, Armand .
PHYSICAL REVIEW LETTERS, 2008, 100 (03)
[8]   Enhanced Diffusion of Enzymes that Catalyze Exothermic Reactions [J].
Golestanian, Ramin .
PHYSICAL REVIEW LETTERS, 2015, 115 (10)
[9]  
Grosberg A., 1994, Statistical Physics of Macromolecules
[10]  
Hawkins R J., 2004, PHYS REV LETT, V93, P7