Rapid and direct sequencing of double-stranded DNA using exonuclease III and MALDI-TOF MS

被引:21
|
作者
Puapaiboon, U
Jai-nhuknan, J
Cowan, JA
机构
[1] Ohio State Univ, Evans Lab Chem, Columbus, OH 43210 USA
[2] Bruker Dalton Inc, Fremont, CA USA
关键词
D O I
10.1021/ac000181n
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
Application of MALDI-TOF MS to direct sequencing of dsDNA substrates is demonstrated using a strategy that employs exonuclease III digestion of a target sequence. Experimental conditions for exonuclease III have been optimized for this application, including addition of essential divalent metal ion cofactors. A short cation-exchange column was designed to provide efficient sample cleanup and overcome major problems arising from salt interference.
引用
收藏
页码:3338 / 3341
页数:4
相关论文
共 50 条
  • [31] A Comprehensive Analysis of MALDI-TOF MS and Ribosomal DNA Sequencing for Identification of Clinical Yeasts
    Taverna C.G.
    Mazza M.
    Refojo N.
    Davel G.
    Current Fungal Infection Reports, 2017, 11 (4) : 184 - 189
  • [32] Proteome analysis using MALDI-TOF MS
    Maeda, M
    Mori, H
    Wada, C
    SEIKAGAKU, 2003, 75 (05): : 400 - 406
  • [33] SEQUENCING OF LARGE DOUBLE-STRANDED DNA USING THE DIDEOXY SEQUENCING TECHNIQUE
    HONG, GF
    BIOSCIENCE REPORTS, 1982, 2 (11) : 907 - 912
  • [34] Extension and application of a database for the rapid identification of Vibrio using MALDI-TOF MS
    Jing Wu
    Yuexia Zhou
    Xiaofei Liu
    Yuan Cao
    Chengjin Hu
    Yingjian Chen
    Acta Oceanologica Sinica, 2020, 39 : 140 - 146
  • [35] Detection of non-covalent interaction of single and double stranded DNA with peptides by MALDI-TOF
    Lin, SH
    Cotter, RJ
    Woods, AS
    PROTEINS-STRUCTURE FUNCTION AND GENETICS, 1998, : 12 - 21
  • [36] Comparison of Rapid Biodiversity Assessment of Meiobenthos Using MALDI-TOF MS and Metabarcoding
    Rossel, Sven
    Khodami, Sahar
    Arbizu, Pedro Martinez
    FRONTIERS IN MARINE SCIENCE, 2019, 6
  • [37] Extension and application of a database for the rapid identification of Vibrio using MALDI-TOF MS
    Jing Wu
    Yuexia Zhou
    Xiaofei Liu
    Yuan Cao
    Chengjin Hu
    Yingjian Chen
    ActaOceanologicaSinica, 2020, 39 (10) : 140 - 146
  • [38] Extension and application of a database for the rapid identification of Vibrio using MALDI-TOF MS
    Wu, Jing
    Zhou, Yuexia
    Liu, Xiaofei
    Cao, Yuan
    Hu, Chengjin
    Chen, Yingjian
    ACTA OCEANOLOGICA SINICA, 2020, 39 (10) : 140 - 146
  • [39] Rapid identification of bacteria from agricultural environment using MALDI-TOF MS
    Suranyi, B. B.
    Taczman-Bruckner, A.
    Mohacsi-Farkas, Cs.
    Engelhardt, T.
    ACTA ALIMENTARIA, 2023, 52 (01) : 113 - 120
  • [40] Rapid antibiotic susceptibility testing on blood cultures using MALDI-TOF MS
    Sauget, Marlene
    Bertrand, Xavier
    Hocquet, Didier
    PLOS ONE, 2018, 13 (10):