SEED-G: Simulated EEG Data Generator for Testing Connectivity Algorithms
被引:13
作者:
Anzolin, Alessandra
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Harvard Med Sch, Massachusetts Gen Hosp, Dept Radiol, Athinoula A Martinos Ctr Biomed Imaging, Boston, MA 02129 USA
Sapienza Univ Rome, Dept Comp Control & Management Engn, I-00185 Rome, Italy
IRCCS Fdn Santa Lucia, I-00179 Rome, ItalyHarvard Med Sch, Massachusetts Gen Hosp, Dept Radiol, Athinoula A Martinos Ctr Biomed Imaging, Boston, MA 02129 USA
Anzolin, Alessandra
[1
,2
,3
]
Toppi, Jlenia
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机构:
Sapienza Univ Rome, Dept Comp Control & Management Engn, I-00185 Rome, Italy
IRCCS Fdn Santa Lucia, I-00179 Rome, ItalyHarvard Med Sch, Massachusetts Gen Hosp, Dept Radiol, Athinoula A Martinos Ctr Biomed Imaging, Boston, MA 02129 USA
Toppi, Jlenia
[2
,3
]
Petti, Manuela
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机构:
Sapienza Univ Rome, Dept Comp Control & Management Engn, I-00185 Rome, Italy
IRCCS Fdn Santa Lucia, I-00179 Rome, ItalyHarvard Med Sch, Massachusetts Gen Hosp, Dept Radiol, Athinoula A Martinos Ctr Biomed Imaging, Boston, MA 02129 USA
Petti, Manuela
[2
,3
]
Cincotti, Febo
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机构:
Sapienza Univ Rome, Dept Comp Control & Management Engn, I-00185 Rome, Italy
IRCCS Fdn Santa Lucia, I-00179 Rome, ItalyHarvard Med Sch, Massachusetts Gen Hosp, Dept Radiol, Athinoula A Martinos Ctr Biomed Imaging, Boston, MA 02129 USA
Cincotti, Febo
[2
,3
]
Astolfi, Laura
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机构:
Sapienza Univ Rome, Dept Comp Control & Management Engn, I-00185 Rome, Italy
IRCCS Fdn Santa Lucia, I-00179 Rome, ItalyHarvard Med Sch, Massachusetts Gen Hosp, Dept Radiol, Athinoula A Martinos Ctr Biomed Imaging, Boston, MA 02129 USA
Astolfi, Laura
[2
,3
]
机构:
[1] Harvard Med Sch, Massachusetts Gen Hosp, Dept Radiol, Athinoula A Martinos Ctr Biomed Imaging, Boston, MA 02129 USA
EEG signals are widely used to estimate brain circuits associated with specific tasks and cognitive processes. The testing of connectivity estimators is still an open issue because of the lack of a ground-truth in real data. Existing solutions such as the generation of simulated data based on a manually imposed connectivity pattern or mass oscillators can model only a few real cases with limited number of signals and spectral properties that do not reflect those of real brain activity. Furthermore, the generation of time series reproducing non-ideal and non-stationary ground-truth models is still missing. In this work, we present the SEED-G toolbox for the generation of pseudo-EEG data with imposed connectivity patterns, overcoming the existing limitations and enabling control of several parameters for data simulation according to the user's needs. We first described the toolbox including guidelines for its correct use and then we tested its performances showing how, in a wide range of conditions, datasets composed by up to 60 time series were successfully generated in less than 5 s and with spectral features similar to real data. Then, SEED-G is employed for studying the effect of inter-trial variability Partial Directed Coherence (PDC) estimates, confirming its robustness.
机构:
IRCCS Fdn St Lucia, I-00179 Rome, Italy
Univ Roma La Sapienza, Dipartimento Fisiol Umana & Farmacol, I-00185 Rome, Italy
Univ Roma La Sapienza, Dipartimento Informat & Sistemist, I-00185 Rome, ItalyIRCCS Fdn St Lucia, I-00179 Rome, Italy
Astolfi, L.
Cincotti, F.
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IRCCS Fdn St Lucia, I-00179 Rome, ItalyIRCCS Fdn St Lucia, I-00179 Rome, Italy
Cincotti, F.
Mattia, D.
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IRCCS Fdn St Lucia, I-00179 Rome, ItalyIRCCS Fdn St Lucia, I-00179 Rome, Italy
Mattia, D.
Fallani, F. De Vico
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机构:
Ctr Ric La Sapienza Analisi Modelli & Informaz Ne, I-00185 Rome, ItalyIRCCS Fdn St Lucia, I-00179 Rome, Italy
Fallani, F. De Vico
Tocci, A.
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IRCCS Fdn St Lucia, I-00179 Rome, ItalyIRCCS Fdn St Lucia, I-00179 Rome, Italy
Tocci, A.
Colosimo, A.
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Ctr Ric La Sapienza Analisi Modelli & Informaz Ne, I-00185 Rome, ItalyIRCCS Fdn St Lucia, I-00179 Rome, Italy
Colosimo, A.
Salinari, S.
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机构:
Univ Roma La Sapienza, Dipartimento Informat & Sistemist, I-00185 Rome, ItalyIRCCS Fdn St Lucia, I-00179 Rome, Italy
Salinari, S.
Marciani, M. G.
论文数: 0引用数: 0
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机构:
IRCCS Fdn St Lucia, I-00179 Rome, Italy
Univ Roma Tor Vergata, Dipartimento Neurosci, I-00173 Rome, ItalyIRCCS Fdn St Lucia, I-00179 Rome, Italy
Marciani, M. G.
Hesse, W.
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机构:
Univ Jena, Inst Med Stat Comp Sci & Documentat, D-07743 Jena, GermanyIRCCS Fdn St Lucia, I-00179 Rome, Italy
Hesse, W.
Witte, H.
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Univ Jena, Inst Med Stat Comp Sci & Documentat, D-07743 Jena, GermanyIRCCS Fdn St Lucia, I-00179 Rome, Italy
机构:
Washington Univ, Sch Med, Dept Neurol, St Louis, MO 63110 USA
Washington Univ, Sch Med, Dept Radiol, St Louis, MO 63110 USA
Washington Univ, Sch Med, Dept Anat & Neurobiol, St Louis, MO 63110 USAWashington Univ, Sch Med, Dept Neurol, St Louis, MO 63110 USA
Corbetta, Maurizio
Patel, Gaurav
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机构:
Washington Univ, Sch Med, Dept Radiol, St Louis, MO 63110 USA
Washington Univ, Sch Med, Dept Anat & Neurobiol, St Louis, MO 63110 USAWashington Univ, Sch Med, Dept Neurol, St Louis, MO 63110 USA
Patel, Gaurav
Shulman, Gordon L.
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机构:
Washington Univ, Sch Med, Dept Neurol, St Louis, MO 63110 USAWashington Univ, Sch Med, Dept Neurol, St Louis, MO 63110 USA
机构:
IRCCS Fdn St Lucia, I-00179 Rome, Italy
Univ Roma La Sapienza, Dipartimento Fisiol Umana & Farmacol, I-00185 Rome, Italy
Univ Roma La Sapienza, Dipartimento Informat & Sistemist, I-00185 Rome, ItalyIRCCS Fdn St Lucia, I-00179 Rome, Italy
Astolfi, L.
Cincotti, F.
论文数: 0引用数: 0
h-index: 0
机构:
IRCCS Fdn St Lucia, I-00179 Rome, ItalyIRCCS Fdn St Lucia, I-00179 Rome, Italy
Cincotti, F.
Mattia, D.
论文数: 0引用数: 0
h-index: 0
机构:
IRCCS Fdn St Lucia, I-00179 Rome, ItalyIRCCS Fdn St Lucia, I-00179 Rome, Italy
Mattia, D.
Fallani, F. De Vico
论文数: 0引用数: 0
h-index: 0
机构:
Ctr Ric La Sapienza Analisi Modelli & Informaz Ne, I-00185 Rome, ItalyIRCCS Fdn St Lucia, I-00179 Rome, Italy
Fallani, F. De Vico
Tocci, A.
论文数: 0引用数: 0
h-index: 0
机构:
IRCCS Fdn St Lucia, I-00179 Rome, ItalyIRCCS Fdn St Lucia, I-00179 Rome, Italy
Tocci, A.
Colosimo, A.
论文数: 0引用数: 0
h-index: 0
机构:
Ctr Ric La Sapienza Analisi Modelli & Informaz Ne, I-00185 Rome, ItalyIRCCS Fdn St Lucia, I-00179 Rome, Italy
Colosimo, A.
Salinari, S.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Roma La Sapienza, Dipartimento Informat & Sistemist, I-00185 Rome, ItalyIRCCS Fdn St Lucia, I-00179 Rome, Italy
Salinari, S.
Marciani, M. G.
论文数: 0引用数: 0
h-index: 0
机构:
IRCCS Fdn St Lucia, I-00179 Rome, Italy
Univ Roma Tor Vergata, Dipartimento Neurosci, I-00173 Rome, ItalyIRCCS Fdn St Lucia, I-00179 Rome, Italy
Marciani, M. G.
Hesse, W.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Jena, Inst Med Stat Comp Sci & Documentat, D-07743 Jena, GermanyIRCCS Fdn St Lucia, I-00179 Rome, Italy
Hesse, W.
Witte, H.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Jena, Inst Med Stat Comp Sci & Documentat, D-07743 Jena, GermanyIRCCS Fdn St Lucia, I-00179 Rome, Italy
机构:
Washington Univ, Sch Med, Dept Neurol, St Louis, MO 63110 USA
Washington Univ, Sch Med, Dept Radiol, St Louis, MO 63110 USA
Washington Univ, Sch Med, Dept Anat & Neurobiol, St Louis, MO 63110 USAWashington Univ, Sch Med, Dept Neurol, St Louis, MO 63110 USA
Corbetta, Maurizio
Patel, Gaurav
论文数: 0引用数: 0
h-index: 0
机构:
Washington Univ, Sch Med, Dept Radiol, St Louis, MO 63110 USA
Washington Univ, Sch Med, Dept Anat & Neurobiol, St Louis, MO 63110 USAWashington Univ, Sch Med, Dept Neurol, St Louis, MO 63110 USA
Patel, Gaurav
Shulman, Gordon L.
论文数: 0引用数: 0
h-index: 0
机构:
Washington Univ, Sch Med, Dept Neurol, St Louis, MO 63110 USAWashington Univ, Sch Med, Dept Neurol, St Louis, MO 63110 USA