Hydrokinetic approach to large-scale cardiovascular blood flow

被引:50
作者
Melchionna, Simone [1 ,2 ]
Bernaschi, Massimo [3 ]
Succi, Sauro [3 ,4 ]
Kaxiras, Efthimios [2 ,5 ]
Rybicki, Frank J. [6 ]
Mitsouras, Dimitris [6 ]
Coskun, Ahmet U. [7 ]
Feldman, Charles L. [8 ]
机构
[1] CNR, SOFT INFM, Rome, Italy
[2] Harvard Univ, Sch Engn & Appl Sci, Cambridge, MA 02138 USA
[3] CNR, Ist Applicaz Calcolo, Rome, Italy
[4] Harvard Univ, Initiat Innovat Comp, Cambridge, MA 02138 USA
[5] Harvard Univ, Dept Phys, Cambridge, MA 02138 USA
[6] Harvard Univ, Sch Med, Dept Radiol, Appl Imaging Sci Lab,Brigham & Womens Hosp, Boston, MA 02115 USA
[7] Northeastern Univ, Dept Mech & Ind Engn, Boston, MA 02115 USA
[8] Harvard Univ, Sch Med, Div Cardiovasc, Dept Med,Brigham & Womens Hosp, Boston, MA USA
关键词
Lattice Boltzmann; Computational hemodynamics; Atherosclerosis; Accelerator-based supercomputing; ENDOTHELIAL SHEAR-STRESS; LATTICE-BOLTZMANN SIMULATIONS; BOUNDARY-CONDITIONS; WALL SHEAR; PERFORMANCE; ARTERY; ATHEROSCLEROSIS;
D O I
10.1016/j.cpc.2009.10.017
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
We present a computational method for commodity hardware-based clinical cardiovascular diagnosis based on accurate simulation of cardiovascular blood flow. Our approach leverages the flexibility of the Lattice Boltzmann method to implementation on high-performance, commodity hardware. such as Graphical Processing Units. We developed the procedure for the analysis of real-life cardiovascular blood flow case studies. namely, anatomic data acquisition, geometry and mesh generation, flow simulation and data analysis and visualization. We demonstrate the usefulness of our computational tool through a set of large-scale simulations of the flow patterns associated with the arterial tree of a patient which involves two hundred million computational cells. The simulations show evidence of a very rich and heterogeneous endothelial shear stress pattern (ESS), a quantity of recognized key relevance to the localization and progression of major cardiovascular diseases, such as atherosclerosis, and set the stage for future studies involving pulsatile flows. (C) 2009 Elsevier B.V. All rights reserved.
引用
收藏
页码:462 / 472
页数:11
相关论文
共 42 条
  • [1] Abramowitz M., 1972, HDB MATH FUNCTIONS
  • [2] Ahrens J., 2004, VISUALIZATION HDB
  • [3] [Anonymous], HEART STROK ENC
  • [4] Mesoscopic simulations of systolic flow in the human abdominal aorta
    Artoli, AM
    Hoekstra, AG
    Sloot, PMA
    [J]. JOURNAL OF BIOMECHANICS, 2006, 39 (05) : 873 - 884
  • [5] Simulation of a systolic cycle in a realistic artery with the lattice Boltzmann BGK method
    Artoli, AM
    Hoekstra, AG
    Sloot, PMA
    [J]. INTERNATIONAL JOURNAL OF MODERN PHYSICS B, 2003, 17 (1-2): : 95 - 98
  • [6] Performance evaluation of a parallel sparse lattice Boltzmann solver
    Axner, L.
    Bernsdorf, J.
    Zeiser, T.
    Lammers, P.
    Linxweiler, J.
    Hoekstra, A. G.
    [J]. JOURNAL OF COMPUTATIONAL PHYSICS, 2008, 227 (10) : 4895 - 4911
  • [7] THE LATTICE BOLTZMANN-EQUATION - THEORY AND APPLICATIONS
    BENZI, R
    SUCCI, S
    VERGASSOLA, M
    [J]. PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS, 1992, 222 (03): : 145 - 197
  • [8] MUPHY: A parallel MUlti PHYsics/scale code for high performance bio-fluidic simulations
    Bernaschi, M.
    Melchionna, S.
    Succi, S.
    Fyta, M.
    Kaxiras, E.
    Sircar, J. K.
    [J]. COMPUTER PHYSICS COMMUNICATIONS, 2009, 180 (09) : 1495 - 1502
  • [9] BERNASCHI M, 2009, CONCURRENCY IN PRESS, DOI DOI 10.1002/CPE.1466
  • [10] Applying the lattice Boltzmann technique to biofluids: A novel approach to simulate blood coagulation
    Bernsdorf, J.
    Harrison, S. E.
    Smith, S. M.
    Lawford, P. V.
    Hose, D. R.
    [J]. COMPUTERS & MATHEMATICS WITH APPLICATIONS, 2008, 55 (07) : 1408 - 1414