Molecular crowding reduces to a similar extent the diffusion of small solutes and macromolecules: measurement by fluorescence correlation spectroscopy

被引:115
|
作者
Dauty, E
Verkman, AS
机构
[1] Univ Calif San Francisco, Cardiovasc Res Inst, Dept Med, San Francisco, CA 94143 USA
[2] Univ Calif San Francisco, Cardiovasc Res Inst, Dept Physiol, San Francisco, CA 94143 USA
关键词
macromolecular crowding; diffusion; fluorescence correlation spectroscopy; Ficoll-70; viscosity;
D O I
10.1002/jmr.709
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Aqueous environments in living cells are crowded, with up to >50 wt% small and macromolecule-size solutes. We investigated quantitatively one important consequence of molecular crowding-reduced diffusion of biologically important solutes. Fluorescence correlation spectroscopy (FCS) was used to measure the diffusion of a series of fluorescent small solutes and macromolecules. In water, diffusion coefficients (D-w(o)) were (in cm(2)/s X 10(-8)): rhodamine green (270), albumin (52), dextrans (75, 10 kDa; 10, 500 kDa), double-stranded DNAs (96, 20 bp; 10, 1 kb; 3.4, 4.5 kb) and polystyrene nanospheres (5.4, 20 nm w diameter; 2.3, 100 nm). Aqueous-phase diffusion (D-w) in solutions crowded with Ficoll-70 (0-60 wt%) was reduced by up to 650-fold in an exponential manner: D-w=D(w)(o)exp(-[C]/[C](exp)), where [C](exp) is the W concentration (in wt%) of crowding agent reducing Do by 63%. FCS data for all solutes and Ficoll-70 W concentrations fitted well to a model of single-component, simple (non-anomalous) diffusion. Interestingly [C](exp) were nearly identical (11 +/- 2 wt%, SD) for diffusion of the very different types of macromolecules in Ficoll-70 solutions. However, [C](exp) was dependent on the nature of the crowding agent: for example, [C](exp) for diffusion of rhodamine green was 30 wt% for glycerol and 16 wt% for 500 kDa dextran. Our results indicate that molecular crowding can greatly reduce aqueous-phase diffusion of biologically important macromolecules, and demonstrate a previously unrecognized insensitivity of crowding effects on the size and characteristics of the diffusing species. Copyright (C) 2004 John Wiley Sons, Ltd.
引用
收藏
页码:441 / 447
页数:7
相关论文
共 45 条
  • [21] Measurement of the temperature-dependent diffusion properties of nanoparticles by using fluorescence correlation spectroscopy
    Chanbae Jung
    Jaeran Lee
    Manil Kang
    Sok Won Kim
    Journal of the Korean Physical Society, 2014, 65 : 1083 - 1089
  • [22] Measurement of Biomolecular Diffusion in Extracellular Matrix Condensed by Fibroblasts Using Fluorescence Correlation Spectroscopy
    Kihara, Takanori
    Ito, Junri
    Miyake, Jun
    PLOS ONE, 2013, 8 (11):
  • [23] Measurement of the Diffusion Coefficients of Single Molecules by Using Fluorescence Correlation Spectroscopy with a Software Correlator
    Lee, Jaeran
    Lee, Yumi
    Kim, Sok Won
    JOURNAL OF THE KOREAN PHYSICAL SOCIETY, 2011, 59 (05) : 3171 - 3176
  • [24] Fluorescence correlation spectroscopy in small cytosolic compartments depends critically on the diffusion model used
    Gennerich, A
    Schild, D
    BIOPHYSICAL JOURNAL, 2000, 79 (06) : 3294 - 3306
  • [25] Quantitative evaluation of macromolecular crowding environment based on translational and rotational diffusion using polarization dependent fluorescence correlation spectroscopy
    Yamamoto, Johtaro
    Matsui, Akito
    Gan, Fusako
    Oura, Makoto
    Ando, Riku
    Matsuda, Takahiro
    Gong, Jian Ping
    Kinjo, Masataka
    SCIENTIFIC REPORTS, 2021, 11 (01)
  • [26] Quantitative evaluation of macromolecular crowding environment based on translational and rotational diffusion using polarization dependent fluorescence correlation spectroscopy
    Johtaro Yamamoto
    Akito Matsui
    Fusako Gan
    Makoto Oura
    Riku Ando
    Takahiro Matsuda
    Jian Ping Gong
    Masataka Kinjo
    Scientific Reports, 11
  • [27] Accurate use of single molecule fluorescence correlation spectroscopy to determine molecular diffusion times
    Gell, C
    Brockwell, DJ
    Beddard, GS
    Radford, SE
    Kalverda, AP
    Smith, DA
    SINGLE MOLECULES, 2001, 2 (03) : 177 - 181
  • [28] Precise measurement of diffusion by multi-color dual-focus fluorescence correlation spectroscopy
    Mueller, C. B.
    Loman, A.
    Pacheco, V.
    Koberling, F.
    Willbold, D.
    Richtering, W.
    Enderlein, J.
    EPL, 2008, 83 (04)
  • [29] PARTICLE COUNTING BY FLUORESCENCE CORRELATION SPECTROSCOPY - SIMULTANEOUS MEASUREMENT OF AGGREGATION AND DIFFUSION OF MOLECULES IN SOLUTIONS AND IN MEMBRANES
    MEYER, T
    SCHINDLER, H
    BIOPHYSICAL JOURNAL, 1988, 54 (06) : 983 - 993
  • [30] Fluorescence Correlation Spectroscopy Analysis of Effect of Molecular Crowding on Self-Assembly of β-Annulus Peptide into Artificial Viral Capsid
    Kobayashi, Risako
    Inaba, Hiroshi
    Matsuura, Kazunori
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2021, 22 (09)