The mitochondrial genome of the deep-sea tubeworm Paraescarpia echinospica (Siboglinidae, Annelida) and its phylogenetic implications

被引:14
作者
Sun, Yanan [1 ]
Liang, Qianyong [2 ]
Sun, Jin [1 ]
Yang, Yi [1 ]
Tao, Jun [2 ]
Liang, Jinqiang [2 ]
Feng, Dong [3 ]
Qiu, Jian-Wen [4 ]
Qian, Pei-Yuan [1 ]
机构
[1] Hong Kong Univ Sci & Technol, Div Life Sci, Hong Kong, Hong Kong, Peoples R China
[2] China Geol Survey, Guangzhou Marine Geol Survey, MLR Key Lab Marine Mineral Resources, Guangzhou, Guangdong, Peoples R China
[3] Chinese Acad Sci, South China Sea Inst Oceanol, CAS Key Lab Ocean & Marginal Sea Geol, Guangzhou, Guangdong, Peoples R China
[4] Hong Kong Baptist Univ, Dept Biol, Hong Kong, Hong Kong, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2018年 / 3卷 / 01期
关键词
Tubeworm; deep-sea; mitogenome; Paraescarpia echinospica; next generation sequencing; ANNELIDA; POGONOPHORA; SEEPS;
D O I
10.1080/23802359.2018.1424576
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Paraescarpia echinospica is a conspicuous annelid living in the cold seeps and hydrothermal vents of the Western Pacific region and relying on their endosymbiont bacteria as a source of energy and organic carbon. We report the complete mitochondrial genome of P. echinospica, which is 15,280 bp in length, containing 13 protein-coding genes, two ribosomal RNA genes, 22 tRNA genes and a putative control region. The overall base composition is AT-biased. The control region contains repeated nucleotide motifs. Phylogenetic analyses of the concatenated mitochondrial genes strongly support a sister relationship of P. echinospica with a Glade containing Escarpia and Seepiophila.
引用
收藏
页码:131 / +
页数:2
相关论文
共 13 条
  • [1] Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    Altschul, SF
    Madden, TL
    Schaffer, AA
    Zhang, JH
    Zhang, Z
    Miller, W
    Lipman, DJ
    [J]. NUCLEIC ACIDS RESEARCH, 1997, 25 (17) : 3389 - 3402
  • [2] [Anonymous], 2017, WORLD POLYCHAETA DAT
  • [3] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
    Bankevich, Anton
    Nurk, Sergey
    Antipov, Dmitry
    Gurevich, Alexey A.
    Dvorkin, Mikhail
    Kulikov, Alexander S.
    Lesin, Valery M.
    Nikolenko, Sergey I.
    Son Pham
    Prjibelski, Andrey D.
    Pyshkin, Alexey V.
    Sirotkin, Alexander V.
    Vyahhi, Nikolay
    Tesler, Glenn
    Alekseyev, Max A.
    Pevzner, Pavel A.
    [J]. JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) : 455 - 477
  • [4] MITOS: Improved de novo metazoan mitochondrial genome annotation
    Bernt, Matthias
    Donath, Alexander
    Juehling, Frank
    Externbrink, Fabian
    Florentz, Catherine
    Fritzsch, Guido
    Puetz, Joern
    Middendorf, Martin
    Stadler, Peter F.
    [J]. MOLECULAR PHYLOGENETICS AND EVOLUTION, 2013, 69 (02) : 313 - 319
  • [5] Bright M, 2010, OCEANOGR MAR BIOL, V48, P213
  • [6] Mitochondrial genomes of Clymenella torquata (Maldanidae) and Riftia pachyptila (Siboglinidae):: Evidence for conserved gene order in Annelida
    Jennings, RM
    Halanych, KM
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2005, 22 (02) : 210 - 222
  • [7] Mitogenomics reveals phylogeny and repeated motifs in control regions of the deep-sea family Siboglinidae (Annelida)
    Li, Yuanning
    Kocot, Kevin M.
    Schander, Christoffer
    Santos, Scott R.
    Thornhill, Daniel J.
    Halanych, Kenneth M.
    [J]. MOLECULAR PHYLOGENETICS AND EVOLUTION, 2015, 85 : 221 - 229
  • [8] Authigenic carbonates from newly discovered active cold seeps on the northwestern slope of the South China Sea: Constraints on fluid sources, formation environments, and seepage dynamics
    Liang, Qianyong
    Hu, Yu
    Feng, Dong
    Peckmann, Joern
    Chen, Linying
    Yang, Shengxiong
    Liang, Jinqiang
    Tao, Jun
    Chen, Duofu
    [J]. DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS, 2017, 124 : 31 - 41
  • [9] A Call for Deep-Ocean Stewardship
    Mengerink, Kathryn J.
    Van Dover, Cindy L.
    Ardron, Jeff
    Baker, Maria
    Escobar-Briones, Elva
    Gjerde, Kristina
    Koslow, J. Anthony
    Ramirez-Llodra, Eva
    Lara-Lopez, Ana
    Squires, Dale
    Sutton, Tracey
    Sweetman, Andrew K.
    Levin, Lisa A.
    [J]. SCIENCE, 2014, 344 (6185) : 696 - 698
  • [10] Rouse GW, 2001, ZOOL J LINN SOC-LOND, V132, P55, DOI 10.1006/zjls.2000.0263