Comparison of real-time polymerase chain reaction and conventional biochemical methods for identification of Mycobacterium chelonae-Mycobacterium abscessus group to the species level

被引:5
作者
Guarin, Nora [3 ]
Budvytiene, Indre [3 ]
Ghafghaichi, Laleh [3 ]
Banaei, Niaz [1 ,2 ,3 ]
机构
[1] Stanford Univ, Sch Med, Dept Pathol, Stanford, CA 94305 USA
[2] Stanford Univ, Sch Med, Dept Med Infect Dis, Stanford, CA 94305 USA
[3] Stanford Hosp & Clin, Clin Microbiol Lab, Palo Alto, CA 94304 USA
关键词
M. chelonae-M. abscessus group; M; immunogenum; Real-time PCR; Identification; RAPID IDENTIFICATION; NONTUBERCULOUS MYCOBACTERIA; PSEUDO-OUTBREAKS; PCR; DIFFERENTIATION; EXPERIENCE; GENE;
D O I
10.1016/j.diagmicrobio.2010.03.011
中图分类号
R51 [传染病];
学科分类号
100401 ;
摘要
The Mycobacterium chelonae Mycobacterium abscessus group (MCAG) is the most common cause of infections because of rapidly growing mycobacteria. Rapid identification of MCAG to the species level is essential for choosing empiric antibiotic treatment and for public health measures. In this study, we compared the performance of a single-tube multiplex, real-time polymerase chain reaction (PCR) assay to 3 biochemical tests for species-level identification of 46 MCAG isolates. We show that real-time PCR provides the most accurate results for rapid species-level identification of MCAG. (C) 2010 Elsevier Inc. All rights reserved.
引用
收藏
页码:333 / 336
页数:4
相关论文
共 18 条
[1]   Mycolic acid analysis by high-performance liquid chromatography for identification of Mycobacterium species [J].
Butler, WR ;
Guthertz, LS .
CLINICAL MICROBIOLOGY REVIEWS, 2001, 14 (04) :704-726
[2]   An official ATS/IDSA statement: Diagnosis, treatment, and prevention of nontuberculous mycobacterial diseases [J].
Griffith, David E. ;
Aksamit, Timothy ;
Brown-Elliott, Barbara A. ;
Catanzaro, Antonino ;
Daley, Charles ;
Gordin, Fred ;
Holland, Steven M. ;
Horsburgh, Robert ;
Huitt, Gwen ;
Iademarco, Michael F. ;
Iseman, Michael ;
Olivier, Kenneth ;
Ruoss, Stephen ;
von Reyn, C. Fordham ;
Wallace, Richard J., Jr. ;
Winthrop, Kevin .
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 2007, 175 (04) :367-416
[3]   Evaluation of the MicroSeq system for identification of mycobacteria by 16S ribosomal DNA sequencing and its integration into a routine clinical mycobacteriology laboratory [J].
Hall, L ;
Doerr, KA ;
Wohlfiel, SL ;
Roberts, GD .
JOURNAL OF CLINICAL MICROBIOLOGY, 2003, 41 (04) :1447-1453
[4]   Comparison of DNA pyrosequencing with alternative methods for identification of mycobacteria [J].
Heller, Loree C. ;
Jones, Michael ;
Widen, Ray H. .
JOURNAL OF CLINICAL MICROBIOLOGY, 2008, 46 (06) :2092-2094
[5]   Method for rapid identification and differentiation of the species of the Mycobacterium chelonae complex based on 16S-23S rRNA gene internal transcribed Spacer PCR-restriction analysis [J].
Khan, IUH ;
Selvaraju, SB ;
Yadav, JS .
JOURNAL OF CLINICAL MICROBIOLOGY, 2005, 43 (09) :4466-4472
[6]   GENOTYPIC IDENTIFICATION OF MYCOBACTERIA BY NUCLEIC-ACID SEQUENCE DETERMINATION - REPORT OF A 2-YEAR EXPERIENCE IN A CLINICAL LABORATORY [J].
KIRSCHNER, P ;
SPRINGER, B ;
VOGEL, U ;
MEIER, A ;
WREDE, A ;
KIEKENBECK, M ;
BANGE, FC ;
BOTTGER, EC .
JOURNAL OF CLINICAL MICROBIOLOGY, 1993, 31 (11) :2882-2889
[7]   A Novel Gene, erm(41), Confers Inducible Macrolide Resistance to Clinical Isolates of Mycobacterium abscessus but Is Absent from Mycobacterium chelonae [J].
Nash, Kevin A. ;
Brown-Elliott, Barbara A. ;
Wallace, Richard J., Jr. .
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2009, 53 (04) :1367-1376
[8]  
Odell ID, 2005, AM J CLIN PATHOL, V123, P96, DOI 10.1309/WDR082X9FFJBQQGB
[9]   Rapid Identification of Mycobacterium tuberculosis and Nontuberculous Mycobacteria by Multiplex, Real-Time PCR [J].
Richardson, E. T. ;
Samson, D. ;
Banaei, N. .
JOURNAL OF CLINICAL MICROBIOLOGY, 2009, 47 (05) :1497-1502
[10]   hsp65 sequencing for identification of rapidly growing mycobacteria [J].
Ringuet, H ;
Akoua-Koffi, C ;
Honore, S ;
Varnerot, A ;
Vincent, V ;
Berche, P ;
Gaillard, JL ;
Pierre-Audigier, C .
JOURNAL OF CLINICAL MICROBIOLOGY, 1999, 37 (03) :852-857