The ReFuGe 2020 Consortium-using "omics" approaches to explore the adaptability and resilience of coral holobionts to environmental change

被引:61
作者
Voolstra, Christian R. [1 ]
Miller, David J. [2 ]
Ragan, Mark A. [3 ]
Hoffmann, Ary A. [4 ,5 ]
Hoegh-Guldberg, Ove [6 ]
Bourne, David G. [7 ]
Ball, Eldon E. [8 ]
Ying, Hua [8 ]
Foret, Sylvain [8 ]
Takahashi, Shunichi [9 ]
Weynberg, Karen D. [7 ]
van Oppen, Madeleine J. H. [7 ,10 ,11 ]
Morrow, Kathleen [12 ]
Chan, Cheong Xin [13 ,14 ]
Rosic, Nedeljka [15 ]
Leggat, William [16 ,17 ]
Sprungala, Susanne [16 ,17 ]
Imelfort, Michael [18 ]
Tyson, Gene W. [18 ]
Kassahn, Karin S. [14 ,19 ]
Lundgren, Petra B. [20 ]
Beeden, Roger J. [21 ]
Ravasi, Timothy [22 ,23 ]
Berumen, Michael L. [1 ]
Abal, Eva [20 ]
Fyffe, Theresa [20 ]
机构
[1] King Abdullah Univ Sci & Technol, Red Sea Res Ctr, Div Biol & Environm Sci & Engn, Thuwal 23955, Saudi Arabia
[2] James Cook Univ, ARC Ctr Excellence Coral Reef Studies, Comparat Genom Ctr, Townsville, Qld, Australia
[3] Univ Queensland, ARC Ctr Excellence Bioinformat, Inst Mol Biosci, Brisbane, Qld, Australia
[4] Univ Melbourne, Inst Bio21, Dept Genet, Melbourne, Vic, Australia
[5] Univ Melbourne, Inst Bio21, Dept Zool, Melbourne, Vic, Australia
[6] Univ Queensland, Global Change Inst, Brisbane, Qld, Australia
[7] Australian Inst Marine Sci, Ctr Marine Microbiol & Genet, Townsville, Qld, Australia
[8] Australian Natl Univ, Div Evolut Ecol & Genet, Canberra, ACT, Australia
[9] Natl Inst Basic Biol, Div Environm Photobiol, Okazaki, Aichi, Japan
[10] ARC Ctr Excellence Coral Reef Studies, Townsville, Qld, Australia
[11] Univ Melbourne, Sch Biosci, Parkville, Vic, Australia
[12] Univ New Hampshire, Dept Mol Cellular & Biomed Sci, Durham, NH 03824 USA
[13] Univ Queensland, ARC Ctr Excellence Bioinformat, Brisbane, Qld, Australia
[14] Univ Queensland, Inst Mol Biosci, Brisbane, Qld, Australia
[15] Univ Queensland, Sch Biol Sci, Brisbane, Qld, Australia
[16] James Cook Univ, ARC Ctr Excellence Coral Reef Studies, Townsville, Qld, Australia
[17] James Cook Univ, Sch Pharm & Mol Sci, Townsville, Qld, Australia
[18] Univ Queensland, Australian Ctr Ecogen, Sch Chem & Mol Biosci, Brisbane, Qld, Australia
[19] Womens & Childrens Hosp, SA Pathol, North Adelaide, Australia
[20] Great Barrier Reef Fdn, Brisbane, Qld, Australia
[21] Great Barrier Reef Marine Pk Author, Townsville, Qld, Australia
[22] King Abdullah Univ Sci & Technol, KAUST Environm Epigenet Program, Div Biol & Environm Sci & Engn, Thuwal, Saudi Arabia
[23] King Abdullah Univ Sci & Technol, Div Appl Math & Comp Sci, Thuwal, Saudi Arabia
关键词
coral reef ecosystem; global environmental change; adaptation; resilience; Great Barrier Reef; Red Sea; holobiont; metaorganism; GREAT-BARRIER-REEF; DROSOPHILA-MELANOGASTER; CLIMATE-CHANGE; LIFE-HISTORY; MORPHOLOGICAL PLASTICITY; PIGMENTATION VARIATION; OCEAN ACIDIFICATION; ADAPTATION; GENES; SYMBIODINIUM;
D O I
10.3389/fmars.2015.00068
中图分类号
X [环境科学、安全科学];
学科分类号
08 ; 0830 ;
摘要
Human-induced environmental changes have been linked directly with loss of biodiversity. Coral reefs, which have been severely impacted by anthropogenic activities over the last few decades, exemplify this global problem and provide an opportunity to develop research addressing key knowledge gaps through "omics"-based approaches. While many stressors, e.g., global warming, ocean acidification, overfishing, and coastal development have been identified, there is an urgent need to understand how corals function at a basic level in order to conceive strategies for mitigating future reef loss. In this regard, availability of fully sequenced genomes has been immensely valuable in providing answers to questions of organismal biology. Given that corals are metaorganisms comprised of the coral animal host, its intracellular photosynthetic algae, and associated microbiota (i.e., bacteria, archaea, fungi, viruses), these efforts must focus on entire coral holobionts. The Reef Future Genomics 2020 (ReFuGe 2020) Consortium has formed to sequence hologenomes of 10 coral species representing different physiological or functional groups to provide foundation data for coral reef adaptation research that is freely available to the research community.
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