共 346 条
OpenMolcas: From Source Code to Insight
被引:787
作者:
Galvan, Ignacio Fdez
[1
,2
]
Vacher, Morgane
[1
]
Alavi, Ali
[3
]
Angeli, Celestino
[4
]
Aquilante, Francesco
[5
]
Autschbach, Jochen
[6
]
Bao, Jie J.
[7
,8
]
Bokarev, Sergey I.
[9
]
Bogdanov, Nikolay A.
[3
]
Carlson, Rebecca K.
[7
,8
]
Chibotaru, Liviu F.
[10
]
Creutzberg, Joel
[11
,12
]
Dattani, Nike
[13
]
Delcey, Mickael G.
[1
]
Dong, Sijia S.
[7
,8
]
Dreuw, Andreas
[14
]
Freitag, Leon
[15
]
Manuel Frutos, Luis
[16
,17
]
Gagliardi, Laura
[7
,8
]
Gendron, Frederic
[6
]
Giussani, Angelo
[18
,19
]
Gonzalez, Leticia
[20
]
Grell, Gilbert
[9
]
Guo, Meiyuan
[1
]
Hoyer, Chad E.
[7
,8
]
Johansson, Marcus
[12
]
Keller, Sebastian
[15
]
Knecht, Stefan
[15
]
Kovacevic, Goran
[21
]
Kallman, Erik
[1
]
Li Manni, Giovanni
[3
]
Lundberg, Marcus
[1
]
Ma, Yingjin
[15
]
Mai, Sebastian
[20
]
Malhado, Joao Pedro
[22
]
Malmqvist, Per Ake
[12
]
Marquetand, Philipp
[20
]
Mewes, Stefanie A.
[14
,23
]
Norell, Jesper
[11
]
Olivucci, Massimo
[24
,25
,26
,27
]
Oppel, Markus
[20
]
Quan Manh Phung
[28
]
Pierloot, Kristine
[28
]
Plasser, Felix
[29
]
Reiher, Markus
[15
]
Sand, Andrew M.
[7
,8
]
Schapiro, Igor
[30
]
Sharma, Prachi
[7
,8
]
Stein, Christopher J.
[15
]
Sorensen, Lasse Kragh
[1
]
机构:
[1] Uppsala Univ, Dept Chem, Angstrom Lab, POB 538, SE-75121 Uppsala, Sweden
[2] Uppsala Univ, Dept Chem, BMC, POB 576, SE-75123 Uppsala, Sweden
[3] Max Planck Inst Festkorperforsch, Heisenbergstr 1, D-70569 Stuttgart, Germany
[4] Univ Ferrara, Dipartimento Sci Chim & Farmaceut, Via Luigi Borsari 46, I-44121 Ferrara, Italy
[5] Univ Geneva, Dept Chim Phys, 30 Quai Ernest Ansermet, CH-1211 Geneva 4, Switzerland
[6] SUNY Buffalo, Dept Chem, Buffalo, NY 14260 USA
[7] Univ Minnesota, Dept Chem, Chem Theory Ctr, Minneapolis, MN 55455 USA
[8] Univ Minnesota, Minnesota Supercomp Inst, Minneapolis, MN 55455 USA
[9] Univ Rostock, Inst Phys, Albert Einstein Str 23-24, D-18059 Rostock, Germany
[10] Univ Leuven, Theory Nanomat Grp, Celestijnenlaan 200F, B-3001 Leuven, Belgium
[11] Stockholm Univ, Dept Phys, AlbaNova Univ Ctr, SE-10691 Stockholm, Sweden
[12] Lund Univ, Div Theoret Chem, Kemictr, POB 124, SE-22100 Lund, Sweden
[13] Harvard Smithsonian Ctr Astrophys, 60 Garden St, Cambridge, MA 02138 USA
[14] Heidelberg Univ, Interdisciplinary Ctr Sci Comp, Neuenheimer Feld 205 A, D-69120 Heidelberg, Germany
[15] Swiss Fed Inst Technol, Lab Phys Chem, Vladimir Prelog Weg 2, CH-8093 Zurich, Switzerland
[16] Univ Alcala, Dept Quim Analit Quim Fis & Ingn Quim, E-28871 Madrid, Spain
[17] Univ Alcala, Inst Invest Quim Andres M del Rio, E-28871 Madrid, Spain
[18] UCL, Dept Chem, 20 Gordon St, London WC1H 0AJ, England
[19] Univ Valencia, Inst Ciencia Mol, Apartado 22085, ES-46071 Valencia, Spain
[20] Univ Vienna, Inst Theoret Chem, Fac Chem, Wahringer Str 17, A-1090 Vienna, Austria
[21] Rudjer Boskovic Inst, Div Mat Phys, POB 180,Bijenicka 54, HR-10002 Zagreb, Croatia
[22] Imperial Coll London, Dept Chem, London SW7 2AZ, England
[23] Massey Univ Albany, Ctr Theoret Chem & Phys, NZLAS, Private Bag 102904, Auckland 0632, New Zealand
[24] Univ Siena, Dept Biotechnol Chem & Pharm, Via A Moro 2, I-53100 Siena, Italy
[25] Bowling Green State Univ, Dept Chem, Bowling Green, OH 43403 USA
[26] Univ Strasbourg, CNRS, USIAS, F-67034 Strasbourg, France
[27] Univ Strasbourg, CNRS, Inst Phys & Chim Mat Strasbourg, F-67034 Strasbourg, France
[28] Katholieke Univ Leuven, Dept Chem, Celestijnenlaan 200F, B-3001 Leuven, Belgium
[29] Loughborough Univ, Dept Chem, Loughborough LE11 3TU, Leics, England
[30] Hebrew Univ Jerusalem, Inst Chem, Jerusalem, Israel
[31] Natl Univ Singapore, Dept Chem, Singapore 117543, Singapore
[32] Res Unit MolSys, Theoret Phys Chem, Allee 6 Aout 11, B-4000 Liege, Belgium
[33] Brantsandpatents, Pauline van Pottelsberghelaan 24, B-9051 Sint Denijs Westrem, Belgium
[34] Uppsala Univ, UC3, POB 596, SE-75124 Uppsala, Sweden
基金:
奥地利科学基金会;
瑞士国家科学基金会;
欧盟地平线“2020”;
瑞典研究理事会;
美国国家科学基金会;
关键词:
DENSITY-FUNCTIONAL THEORY;
2ND-ORDER PERTURBATION-THEORY;
MATRIX RENORMALIZATION-GROUP;
AB-INITIO CALCULATIONS;
GENERALIZED GRADIENT APPROXIMATION;
CORRELATED-PARTICIPATING-ORBITALS;
TRANSITION-METAL-COMPLEXES;
STATE-INTERACTION APPROACH;
POTENTIAL-ENERGY SURFACES;
MOLECULAR WAVE-FUNCTIONS;
D O I:
10.1021/acs.jctc.9b00532
中图分类号:
O64 [物理化学(理论化学)、化学物理学];
学科分类号:
070304 ;
081704 ;
摘要:
In this Article we describe the OpenMolcas environment and invite the computational chemistry community to collaborate. The open-source project already includes a large number of new developments realized during the transition from the commercial MOLCAS product to the open-source platform. The paper initially describes the technical details of the new software development platform. This is followed by brief presentations of many new methods, implementations, and features of the OpenMolcas program suite. These developments include novel wave function methods such as stochastic complete active space self-consistent field, density matrix renormalization group (DMRG) methods, and hybrid multiconfigurational wave function and density functional theory models. Some of these implementations include an array of additional options and functionalities. The paper proceeds and describes developments related to explorations of potential energy surfaces. Here we present methods for the optimization of conical intersections, the simulation of adiabatic and nonadiabatic molecular dynamics, and interfaces to tools for semiclassical and quantum mechanical nuclear dynamics. Furthermore, the Article describes features unique to simulations of spectroscopic and magnetic phenomena such as the exact semiclassical description of the interaction between light and matter, various X-ray processes, magnetic circular dichroism, and properties. Finally, the paper describes a number of built-in and add-on features to support the OpenMolcas platform with postcalculation analysis and visualization, a multiscale simulation option using frozen-density embedding theory, and new electronic and muonic basis sets.
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页码:5925 / 5964
页数:40
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