The Research on Raman Spectroscopy of Nucleic Acid Bases Based on DFT Method

被引:0
|
作者
Wu Lei [1 ,2 ]
Li Fei [2 ]
Jin Zhou-Yu [1 ]
Li Yu-Ting [1 ]
Hu Wei [1 ]
机构
[1] Jilin Agr Univ, Sch Life Sci, Changchun 130118, Peoples R China
[2] Jilin Univ, State Key Lab Supramol Struct & Mat, Changchun 130012, Peoples R China
基金
中国国家自然科学基金;
关键词
nucleic acid bases; the density functional theory (DFT); raman spectroscopy; characterization; DENSITY-FUNCTIONAL THEORY; SPECTRA; CYTOSINE; GUANINE; ADENINE; URACIL; SERS; IR;
D O I
暂无
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Nucleic acid bases are an important part of nucleic acids, and Raman spectroscopy is an important technique in studying on molecular structure. Therefore, it has a great significance for the research on the structural changes of nucleic acid macro-molecules and the interactions between nucleic acid molecules and small molecule that the Raman spectroscopy of nucleic acid bases are characterized. In this study, the molecular structures of adenine, guanine, cytosine, thymine and uracil were optimized based on the density functional theory method (DFT). The intra-molecular bond vibration frequency of these five nucleic acid bases were predicted by quantitative calculation, and the Raman spectroscopy of nucleic acid bases was characterized by corresponding the relation between the results of nucleic acid bases Raman spectroscopy in experiment and in theory. Moreover, the characteristic Raman peaks in the Raman spectroscopy of each nucleic acid bases were explanation in detail. It laid the theoretical foundation for the further structural information of nucleic acid molecules by the means of Raman spectra.
引用
收藏
页码:281 / 290
页数:10
相关论文
共 22 条
  • [1] STUDY OF BIOLOGICAL MOLECULES BY RAMAN SPECTROMETRY - EXAMPLE OF APPLICATION - GUANINE, URACIL AND CYTOSINE
    ARIE, G
    ROZANSZA, H
    SEBENNE, C
    DUMAS, G
    DASILVA, E
    [J]. BIOCHIMIE, 1971, 53 (09) : 1041 - &
  • [2] Arshynnikova L L, 2007, Lik Sprava, P3
  • [3] Synthesis, experimental spectra (IR & Raman and NMR), vibrational analysis and theoretical DFT investigations of N-(5-(4-methylbenzoyl)-2-oxo-4-(4-methylphenyl)pyrimidine-1(2H)-yl)-4-methylbenzamide
    Aydin, Lutfiye
    Sahan, Emine
    Onal, Zulbiye
    Ozpozan, Talat
    [J]. SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, 2014, 129 : 22 - 34
  • [4] Excited-state structural dynamics of cytosine from resonance Raman spectroscopy
    Billinghurst, BE
    Loppnow, GR
    [J]. JOURNAL OF PHYSICAL CHEMISTRY A, 2006, 110 (07): : 2353 - 2359
  • [5] pH-Dependent UV Resonance Raman Spectra of Cytosine and Uracil
    Billinghurst, Brant E.
    Oladepo, Sulayman A.
    Loppnow, Glen R.
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2009, 113 (20): : 7392 - 7397
  • [6] INTERACTION OF METAL IONS WITH POLYNUCLEOTIDES AND RELATED COMPOUNDS .X. STUDIES ON REACTION OF SILVER(I) WITH NUCLEOSIDES AND POLYNUCLEOTIDES AND EFFECT OF SILVER(1) ON ZINC(2) DEGRADATION OF POLYNUCLEOTIDES
    EICHHORN, GL
    BUTZOW, JJ
    CLARK, P
    TARIEN, E
    [J]. BIOPOLYMERS, 1967, 5 (03) : 283 - &
  • [7] Adenine and RNA in mineral samples. Surface-enhanced Raman spectroscopy (SERS) for picomole detections
    El Amri, C
    Baron, MH
    Maurel, MC
    [J]. SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, 2003, 59 (11) : 2645 - 2654
  • [8] Label-free surface-enhanced Raman spectroscopy for detection of colorectal cancer and precursor lesions using blood plasma
    Feng, Shangyuan
    Wang, Wenbo
    Tai, Isabella T.
    Chen, Guannan
    Chen, Rong
    Zeng, Haishan
    [J]. BIOMEDICAL OPTICS EXPRESS, 2015, 6 (09): : 3494 - 3502
  • [9] Interaction of anticancer drug cisplatin with guanine: Density functional theory and surface-enhanced Raman spectroscopy study
    Giese, B
    McNaughton, D
    [J]. BIOPOLYMERS, 2003, 72 (06) : 472 - 489
  • [10] Surface-enhanced Raman spectroscopic and density functional theory study of adenine adsorption to silver surfaces
    Giese, B
    McNaughton, D
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2002, 106 (01): : 101 - 112