Characterization of the complete chloroplast genome of sunflower family species Aster Flaccidus (Compositae)

被引:1
|
作者
Zhou, Huijuan [1 ,2 ]
She, Ruixue [2 ]
Xu, Yuan [2 ]
Zhao, Peng [2 ]
Zhang, Shuoxin [1 ]
机构
[1] Northwest A&F Univ, Coll Forestry, Yangling 712100, Shaanxi, Peoples R China
[2] Northwest Univ, Coll Life Sci, Key Lab Resource Biol & Biotechnol Western China, Minist Educ, Xian 710069, Shaanxi, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2019年 / 4卷 / 02期
基金
中国国家自然科学基金;
关键词
Aster flaccidus; complete chloroplast genome; Illumina sequencing;
D O I
10.1080/23802359.2019.1692710
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Aster flaccidus is a perennial medicinal plant belong the sunflower family Compositae, which is widely distributed in China and some other Asian countries. The complete chloroplast genome sequence of A. flaccidus was sequenced using the Illumina Hiseq 4000 platform. The size of the A. flaccidus chloroplast genome is 151,329 bp, with an average GC content of 37.5%. This circular molecule has a typical quadripartite structure containing a large single copy (LSC) region of 83,480 bp, a small single copy (SSC) region of 18,149 bp, and two inverted (IRs) repeat regions of 24,850 bp. A total of 132 genes were successfully annotated containing 87 protein-coding genes, 37 tRNA genes, 8 rRNA genes. A maximum likelihood (ML) phylogenetic tree supported that the chloroplast genome of A. flaccidus is closely related to that of Aster indicus.
引用
收藏
页码:4096 / 4097
页数:2
相关论文
共 50 条
  • [21] Characterization of the complete chloroplast genome of Viburnum schensianum (Adoxaceae)
    Zhao, Yuemei
    Zhou, Tao
    Chen, Xiaodan
    Zhang, Xiao
    MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (02): : 1196 - 1197
  • [22] Characterization of the complete chloroplast genome of Taibaisanqi (Tongoloa silaifolia)
    Gui, Ling-Jian
    Xie, Deng-Feng
    Jia, Sheng-Bin
    Li, Hao
    Xiao, Yan-Ping
    He, Xing-Jin
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 2912 - 2913
  • [23] Characterization of the complete chloroplast genome of the Pistacia vera L
    Mao, Weitao
    Yao, Guoxin
    Chen, Bo
    Pan, Qinghua
    Wang, Hai
    Hu, Guanglong
    Xin, Guo
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 4140 - 4141
  • [24] Characterization of the complete chloroplast genome of Juniperus cedrus (Cupressaceae)
    Guo, Qiqiang
    Bianba, Duoji
    Zheng, Weilie
    MITOCHONDRIAL DNA PART A, 2016, 27 (06) : 4355 - 4356
  • [25] Characterization of the complete chloroplast genome of Actinidia Melanandra (Actinidiaceae)
    Zhao, Yuemei
    Zhao, Zhixin
    Tang, Weili
    Li, Xiaoling
    Zhao, Yongping
    Gao, Baoyun
    Xie, Xiaodan
    Zhang, Xiaobin
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 2195 - 2196
  • [26] Characterization of the complete chloroplast genome of Koelreuteria paniculata (Sapindaceae)
    Kim, Sang-Chul
    Baek, Seung-Hoon
    Hong, Kyung-Nak
    Lee, Jei-Wan
    CONSERVATION GENETICS RESOURCES, 2018, 10 (01) : 69 - 72
  • [27] Characterization of the complete chloroplast genome of Koelreuteria paniculata (Sapindaceae)
    Sang-Chul Kim
    Seung-Hoon Baek
    Kyung-Nak Hong
    Jei-Wan Lee
    Conservation Genetics Resources, 2018, 10 : 69 - 72
  • [28] Characterization of the complete chloroplast genome of sorrel (Rumex acetosa)
    Gui, Lingjian
    Jiang, Shaofeng
    Wang, Huaiping
    Nong, Dongxin
    Liu, Yingying
    MITOCHONDRIAL DNA PART B-RESOURCES, 2018, 3 (02): : 904 - 906
  • [29] Characterization of the complete chloroplast genome of Centaurea maculosa (Asteraceae)
    Park, Kyu Tae
    Park, Lajin
    Kim, Joo-Hwan
    Park, Seonjoo
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 3929 - 3930
  • [30] Characterization of the complete chloroplast genome of Fraxinus mandshurica (Oleaceae)
    Zhao, Yuemei
    Zhou, Tao
    Zhang, Xiao
    Chen, Xiaodan
    Bai, Guoqing
    MITOCHONDRIAL DNA PART B-RESOURCES, 2018, 3 (02): : 1270 - 1271