QSIPrep: an integrative platform for preprocessing and reconstructing diffusion MRI data

被引：140

作者：

Cieslak, Matthew ^{[1
]}

Cook, Philip A. ^{[1
]}

He, Xiaosong ^{[1
]}

Yeh, Fang-Cheng ^{[2
]}

Dhollander, Thijs ^{[3
]}

Adebimpe, Azeez ^{[1
]}

Aguirre, Geoffrey K. ^{[1
]}

Bassett, Danielle S. ^{[1
]}

Betzel, Richard F. ^{[4
]}

Bourque, Josiane ^{[1
]}

Cabral, Laura M. ^{[2
]}

Davatzikos, Christos ^{[1
]}

Detre, John A. ^{[1
]}

Earl, Eric ^{[5
]}

Elliott, Mark A. ^{[1
]}

Fadnavis, Shreyas ^{[4
]}

Fair, Damien A. ^{[6
]}

Foran, Will ^{[2
]}

Fotiadis, Panagiotis ^{[1
]}

Garyfallidis, Eleftherios ^{[4
]}

Giesbrecht, Barry ^{[7
]}

Gur, Ruben C. ^{[1
]}

Gur, Raquel E. ^{[1
]}

Kelz, Max B. ^{[1
]}

Keshavan, Anisha ^{[8
]}

Larsen, Bart S. ^{[1
]}

Luna, Beatriz ^{[2
]}

Mackey, Allyson P. ^{[1
]}

Milham, Michael P. ^{[9
]}

Oathes, Desmond J. ^{[1
]}

Perrone, Anders ^{[5
,6
]}

Pines, Adam R. ^{[1
]}

Roalf, David R. ^{[1
]}

Richie-Halford, Adam ^{[8
]}

Rokem, Ariel ^{[8
]}

Sydnor, Valerie J. ^{[1
]}

Tapera, Tinashe M. ^{[1
]}

Tooley, Ursula A. ^{[1
]}

Vettel, Jean M. ^{[10
]}

Yeatman, Jason D. ^{[11
]}

Grafton, Scott T. ^{[7
]}

Satterthwaite, Theodore D. ^{[1
]}

机构：

[1] Univ Penn, Philadelphia, PA 19104 USA

[2] Univ Pittsburgh, Pittsburgh, PA USA

[3] Murdoch Childrens Res Inst, Melbourne, Vic, Australia

[4] Indiana Univ, Bloomington, IN USA

[5] Oregon Hlth & Sci Univ, Portland, OR 97201 USA

[6] Univ Minnesota, Minneapolis, MN USA

[7] Univ Calif Santa Barbara, Santa Barbara, CA 93106 USA

[8] Univ Washington, Seattle, WA 98195 USA

[9] Child Mind Inst, New York, NY USA

[10] US Army, Res Labs, Aberdeen, MD USA

[11] Stanford Univ, Stanford, CA 94305 USA

来源：

NATURE METHODS | 2021年 / 18卷 / 07期

基金：

美国国家卫生研究院;

关键词：

MAP-MRI; ATLAS;

D O I：

10.1038/s41592-021-01185-5

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Diffusion-weighted magnetic resonance imaging (dMRI) is the primary method for noninvasively studying the organization of white matter in the human brain. Here we introduce QSIPrep, an integrative software platform for the processing of diffusion images that is compatible with nearly all dMRI sampling schemes. Drawing on a diverse set of software suites to capitalize on their complementary strengths, QSIPrep facilitates the implementation of best practices for processing of diffusion images. QSIPrep is a software platform for processing of most diffusion MRI datasets and ensures that adequate workflows are used.

引用

页码：775 / +

页数：16

共 44 条

[1] A general framework for experiment design in diffusion MRI and its application in measuring direct tissue-microstructure features [J].