Gene-rich UV sex chromosomes harbor conserved regulators of sexual development

被引:69
作者
Carey, Sarah B. [1 ,18 ,19 ]
Jenkins, Jerry [2 ]
Lovell, John T. [2 ]
Maumus, Florian [3 ]
Sreedasyam, Avinash [2 ]
Payton, Adam C. [1 ,4 ]
Shu, Shengqiang [5 ]
Tiley, George P. [6 ]
Fernandez-Pozo, Noe [7 ]
Healey, Adam [2 ]
Barry, Kerrie [5 ]
Chen, Cindy [5 ]
Wang, Mei [5 ]
Lipzen, Anna [5 ]
Daum, Chris [5 ]
Saski, Christopher A. [8 ]
McBreen, Jordan C. [1 ]
Conrad, Roth E. [9 ]
Kollar, Leslie M. [1 ]
Olsson, Sanna [10 ]
Huttunen, Sanna [11 ,12 ]
Landis, Jacob B. [13 ]
Burleigh, J. Gordon [1 ]
Wickett, Norman J. [14 ]
Johnson, Matthew G. [15 ]
Rensing, Stefan A. [7 ,16 ,17 ]
Grimwood, Jane [2 ,5 ]
Schmutz, Jeremy [2 ,5 ]
McDaniel, Stuart F. [1 ]
机构
[1] Univ Florida, Dept Biol, Gainesville, FL 32611 USA
[2] HudsonAlpha Inst Biotechnol, Genome Sequencing Ctr, Huntsville, AL USA
[3] Univ Paris Saclay, URGI, INRAE, F-78026 Versailles, France
[4] RAPiD Genom, Gainesville, FL USA
[5] US DOE, Lawrence Berkeley Natl Lab, Joint Genome Inst, Berkeley, CA USA
[6] Duke Univ, Dept Biol, Durham, NC USA
[7] Univ Marburg, Plant Cell Biol, Marburg, Germany
[8] Clemson Univ, Dept Plant & Environm Sci, Clemson, SC USA
[9] Georgia Inst Technol, Sch Biol Sci, Atlanta, GA 30332 USA
[10] INIA CIFOR, Dept Forest Ecol & Genet, Madrid, Spain
[11] Univ Turku, Dept Biol, Turku, Finland
[12] Univ Turku, Biodivers Unit, Turku, Finland
[13] Cornell Univ, Sch Integrat Plant Sci, LH Bailey Hortorium & Sect Plant Biol, Ithaca, NY USA
[14] Negaunee Inst Plant Conservat Sci & Act, Chicago Bot Garden, Glencoe, IL USA
[15] Texas Tech Univ, Dept Biol Sci, Lubbock, TX 79409 USA
[16] Univ Marburg, Ctr Synthet Microbiol SYNMIKRO, Hans Meerwein Str 6, D-35032 Marburg, Germany
[17] Univ Freiburg, BIOSS Ctr Biol Signalling Studies, Schanzlestr 18, D-79104 Freiburg, Germany
[18] Auburn Univ, Dept Crop Soil & Environm Sci, Auburn, AL 36849 USA
[19] HudsonAlpha Inst Biotechnol, Huntsville, AL USA
基金
美国国家科学基金会;
关键词
PHYLOGENETIC ANALYSIS; GENOME ANNOTATION; R PACKAGE; CD-HIT; EVOLUTION; SEQUENCE; PROTEIN; TOOL; REVEALS; COMPLEX;
D O I
10.1126/sciadv.abh2488
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Nonrecombining sex chromosomes, like the mammalian Y, often lose genes and accumulate transposable elements, a process termed degeneration. The correlation between suppressed recombination and degeneration is clear in animal XY systems, but the absence of recombination is confounded with other asymmetries between the X and Y. In contrast, UV sex chromosomes, like those found in bryophytes, experience symmetrical population genetic conditions. Here, we generate nearly gapless female and male chromosome-scale reference genomes of the moss Ceratodon purpureus to test for degeneration in the bryophyte UV sex chromosomes. We show that the moss sex chromosomes evolved over 300 million years ago and expanded via two chromosomal fusions. Although the sex chromosomes exhibit weaker purifying selection than autosomes, we find that suppressed recombination alone is insufficient to drive degeneration. Instead, the U and V sex chromosomes harbor thousands of broadly expressed genes, including numerous key regulators of sexual development across land plants.
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页数:12
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