Kinetics of histidine dissociation from the heme Fe(III) in N-fragment (residues 1-56) of cytochrome c

被引:7
作者
Abbruzzetti, S
Viappiani, C
Sinibaldi, F
Santucci, R
机构
[1] Univ Parma, Dipartimento Fis, I-43100 Parma, Italy
[2] Univ Roma Tor Vergata, Dipartimento Med Sperimentale & Sci Biochim, Rome, Italy
关键词
caged proton; cytochrome c; fast kinetics; laser pH-jump; protein folding;
D O I
10.1007/s10930-004-7879-x
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We have here investigated the dissociation kinetics of the His side chains axially ligated to the heme-iron in the ferric (1-56 residues) N-fragment of horse cyt c. The ligand deligation induced by acidic pH-jump occurs as a biexponential process with different pre-exponential factors, consistent with a structural heterogeneity in solution and the presence of two differently coordinated species. In analogy with GuHCl-denatured cyt c, our data indicate the presence in solution of two ferric forms of the N-fragment characterized by bis-His coordination, as summarized in the following scheme: His18-Fe(III)-His26 (-->)(<--) His18-Fe(III)-His33. We have found that the pre-exponential factors depend on the extent of the pH-jump. This may be correlated with the different pK(a) values shown by His26 and His33; due to steric factors, His26 binds to the heme-Fe(III) less strongly than His33, as recently shown by studies on denatured cyt c. Interestingly, the two lifetimes are affected by temperature but not by the extent of the pH-jump. The lower pK(a) for the deligation reaction required the use of an improved laser pH-jump setup, capable of inducing changes in H+ concentration as large as 1 mM after the end of the laser pulse. For the ferric N-fragment, close activation entropy values have been determined for the two histidines coordinated to the iron; this result significantly differs from that for GuHCl-denatured cyt c, where largely different values of activation entropy were calculated. This underlines the role played by the missing segment (residues 57-104) peptide chain in discriminating deligation of the "nonnative'' His from the sixth coordination position of the metal.
引用
收藏
页码:519 / 527
页数:9
相关论文
共 37 条
  • [11] Time-resolved dynamics of proton transfer in proteinous systems
    Gutman, M
    Nachliel, E
    [J]. ANNUAL REVIEW OF PHYSICAL CHEMISTRY, 1997, 48 : 329 - 356
  • [12] THE DYNAMIC ASPECTS OF PROTON-TRANSFER PROCESSES
    GUTMAN, M
    NACHLIEL, E
    [J]. BIOCHIMICA ET BIOPHYSICA ACTA, 1990, 1015 (03) : 391 - 414
  • [13] THE PH JUMP - A RAPID MODULATION OF PH OF AQUEOUS-SOLUTIONS BY A LASER-PULSE
    GUTMAN, M
    HUPPERT, D
    PINES, E
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1981, 103 (13) : 3709 - 3713
  • [14] Diffusion control in an elementary protein folding reaction
    Jacob, M
    Schindler, T
    Balbach, J
    Schmid, FX
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1997, 94 (11) : 5622 - 5627
  • [15] Laidler KJ., 1987, CHEM KINETICS
  • [16] Marantz Y, 1999, ISRAEL J CHEM, V39, P439
  • [17] Folding of a pressure-denatured model protein
    Mohana-Borges, R
    Silva, JL
    Ruiz-Sanz, J
    de Prat-Gay, G
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (14) : 7888 - 7893
  • [18] Mechanisms of fast protein folding
    Myers, JK
    Oas, TG
    [J]. ANNUAL REVIEW OF BIOCHEMISTRY, 2002, 71 : 783 - 815
  • [19] Protein folding funnels: The nature of the transition state ensemble
    Onuchic, JN
    Socci, ND
    LutheySchulten, Z
    Wolynes, PG
    [J]. FOLDING & DESIGN, 1996, 1 (06): : 441 - 450
  • [20] Coupled kinetic traps in cytochrome c folding:: His-heme misligation and proline isomerization
    Pierce, MM
    Nall, BT
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 2000, 298 (05) : 955 - 969