DFT calculations of the 1H chemical shifts and 13C chemical shift tensors of retinal isomers

被引:9
|
作者
Touw, SIE [1 ]
de Groot, HJM [1 ]
Buda, F [1 ]
机构
[1] Leiden Univ, Leiden Inst Chem, Gorlaeus Labs, NL-2300 RA Leiden, Netherlands
来源
JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM | 2004年 / 711卷 / 1-3期
关键词
retinal-isomers; DFT; C-13 NMR tensor; H-1 NMR chemical shifts; rhodopsin;
D O I
10.1016/j.theochem.2004.09.019
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
An ab initio study on the accuracy of the prediction of C-13 isotropic chemical shifts and nuclear magnetic shielding tensors of several geometric isomers of retinal within the density functional theory framework at the B3LYP/6-31G level is presented. In addition, the accuracy of the calculated H-1 chemical shifts of the vinyl protons is investigated. The results are compared with available experimental data from solution and solid-state NMR. The calculated C-13 isotropic chemical shifts in the conjugated chain of the retinal isomers are in reasonable agreement with the experiment with a rms error of 4.1 ppm and a correlation coefficient rho = 0.982. For the calculated H-1 isotropic chemical shifts of the vinyl protons, the overall rms error is 0.5 ppm and the correlation coefficient is rho = 0.993. We conclude that, even with a small basis set, density functional theory provides a valuable tool in the prediction of C-13 NMR properties. A larger basis set is recommended to predict H-1 chemical shifts. (C) 2004 Elsevier B.V. All rights reserved.
引用
收藏
页码:141 / 147
页数:7
相关论文
共 50 条
  • [31] Analysis of 1H chemical shifts in DNA: Assessment of the reliability of 1H chemical shift calculations for use in structure refinement
    Sybren S. Wijmenga
    Martijn Kruithof
    Cees W. Hilbers
    Journal of Biomolecular NMR, 1997, 10 : 337 - 350
  • [32] Solvation effects on the correlation between DFT calculated and experimental 1H and 13C NMR chemical shifts for lignin constituents
    Watts, Heath D.
    Kubicki, James D.
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2012, 244
  • [33] DFT-GIAO 1H and 13C NMR prediction of chemical shifts for the configurational assignment of 6β-hydroxyhyoscyamine diastereoisomers
    Munoz, Marcelo A.
    Joseph-Nathan, Pedro
    MAGNETIC RESONANCE IN CHEMISTRY, 2009, 47 (07) : 578 - 584
  • [34] 1H and 13C NMR chemical shifts of some thienyl-substituted chromenes
    Moustrou, C
    Rebiere, N
    Frigoli, M
    Pottier, E
    Guglielmetti, R
    Faure, R
    MAGNETIC RESONANCE IN CHEMISTRY, 1998, 36 (07) : 548 - 550
  • [35] 1H and 13C chemical shifts for tetracycle-fused acridine analogues of amsacrine
    Robin, M
    Galy, JP
    Faure, R
    MAGNETIC RESONANCE IN CHEMISTRY, 2001, 39 (04) : 225 - 228
  • [36] Effects of solvent dielectric on 1H and 13C NMR random coil chemical shifts
    Tremblay, M. -L.
    Banks, A. W.
    Rainey, J. K.
    BIOCHEMISTRY AND CELL BIOLOGY-BIOCHIMIE ET BIOLOGIE CELLULAIRE, 2010, 88 (02): : 414 - 414
  • [37] 1H and 13C chemical shifts of 4,5-disubstituted acridine derivatives
    Issmaili, S
    Pique, V
    Galy, JP
    Faure, R
    MAGNETIC RESONANCE IN CHEMISTRY, 1999, 37 (08) : 591 - 593
  • [39] 1H and 13C chemical shifts for bis(benzopyridinium) dibromides with semirigid aromatic linkers
    Campos, J
    Díaz, JJ
    Núñez, MC
    Entrena, A
    Gallo, MA
    Espinosa, A
    MAGNETIC RESONANCE IN CHEMISTRY, 2002, 40 (08) : 554 - 556
  • [40] Efficiently Computing NMR 1H and 13C Chemical Shifts of Saccharides in Aqueous Environment
    Palivec, Vladimir
    Pohl, Radek
    Kaminsky, Jakub
    Martinez-Seara, Hector
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2022, 18 (07) : 4373 - 4386