Fitting Evolution of Matrix Protein 1 from Influenza A Virus Using Analytical Solution of System of Differential Equations

被引:1
作者
Yan, Shaomin [1 ]
Li, Zhenchong [1 ]
Wu, Guang [2 ]
机构
[1] Guangxi Acad Sci, Natl Engn Res Ctr Nonfood Biorefinery, Nanning 530007, Guangxi, Peoples R China
[2] DreamSciTech Consulting, Computat Mutat Project, Shenzhen 518054, Guangdong, Peoples R China
关键词
Amino-acid pair predictability; differential equation; evolution; fitting; influenza a virus; matrix protein 1; AMINO-ACID-COMPOSITION; M2 PROTON CHANNEL; SUBCELLULAR LOCATION PREDICTION; FAST FOURIER-TRANSFORM; STRUCTURAL CLASSES; BINDING MECHANISM; DRUG-RESISTANCE; ENZYME-KINETICS; NEURAMINIDASE; H5N1;
D O I
10.2174/092986610790963717
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The understanding of evolutionary mechanism is important, and equally important is to describe the evolutionary process. If so, we would know where the biological evolution will go. At species level, we would know whether and when a species will extinct or be prosperous. At protein level, we would know when a protein family will mutate more. In our previous study, we explored the possibility of using the differential equation to describe the evolution of protein family from influenza A virus based on the assumption that the mutation process is the exchange of entropy between protein family and its environment. In this study, we use the analytical solution of system of differential equations to fit the evolution of matrix protein 1 family from influenza A virus. Because the evolutionary process goes along the time course, it can be described by differential equation. The results show that the evolution of a protein family can be fitted by the analytical solution. With the obtained fitted parameters, we may predict the evolution of matrix protein 1 family from influenza A virus. Our model would be the first step towards the systematical modeling of biological evolution and paves the way for further modeling.
引用
收藏
页码:530 / 541
页数:12
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