Activation/Inactivation Role of Ionic Liquids on Formate Dehydrogenase from Pseudomonas sp 101 and Its Mutated Thermostable Form

被引:14
作者
D'Oronzo, Erica [1 ]
Secundo, Francesco [1 ]
Minofar, Babak [5 ,6 ]
Kulik, Natallia [5 ]
Pometun, Anastasia A. [2 ,4 ]
Tishkov, Vladimir I. [2 ,3 ,4 ]
机构
[1] CNR, Ist Chim Riconoscimento Mol, Via Mario Bianco 9, I-20131 Milan, Italy
[2] Innovat & High Technol MSU Ltd, Tsymlyanskaya Ul,16-96, Moscow 109451, Russia
[3] Moscow MV Lomonosov State Univ, Chem Fac, Leninskie Gory 1-3, Moscow 119991, Russia
[4] Russian Acad Sci, Res Ctr Biotechnol, AN Bach Inst Biochem, Bld 2 Leninsky Ave, Moscow 119071, Russia
[5] Acad Sci Czech Republ, Inst Microbiol, Zamek 136, Nove Hrady 37333, Czech Republic
[6] Univ South Bohemia, Fac Sci, Branisovsk 1760, Ceske Budejovice 37005, Czech Republic
基金
俄罗斯基础研究基金会;
关键词
enzymes; fluorescence spectroscopy; ionic liquids; molecular dynamics; oxidoreductases; MOLECULAR-DYNAMICS SIMULATIONS; CATION-PI INTERACTIONS; PROTEIN CONFORMATION; ORGANIC-SOLVENTS; ENZYME CATALYSIS; STABILITY; INTERFACE; FLUORESCENCE; CHARGE; SITE;
D O I
10.1002/cctc.201800145
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Ionic liquids (ILs) are used in numerous research areas including biocatalysis. The effect of ILs/water mixture on the activity of wild type and a more thermally and chemically stable mutant (SM4) of a specific formate dehydrogenases (PseFDH, EC1.2.1.2) were studied experimentally and by molecular dynamics (MD) simulations. The ILs investigated were [Mmim][Me2PO4], [Bmim][Br], [Bmim][CH3SO3], [Bmim][BF4], [Bmim][AcO], and it was found that low concentrations (optimally 2.5%) of some ILs increased (up to 42%) the activity of the SM4 FDH but not of the WT FDH. Using intrinsic fluorescence to calculate Stern-Volmer constants and thermodynamic parameters, we have studied protein conformational changes caused by ILs for both enzymes. Kinetic analyses allowed us to shed light on the mechanism of activation by 2.5% [Bmim][BF4] on the mutant enzyme. MD simulation provided evidences of a molecular basis of different enzyme activities in ILs that well correlated with the experimental data.
引用
收藏
页码:3247 / 3259
页数:13
相关论文
共 68 条
[1]   The Role of Ala198 in the Stability and Coenzyme Specificity of Bacterial Formate Dehydrogenases [J].
Alekseeva, A. A. ;
Fedorchuk, V. V. ;
Zarubina, S. A. ;
Sadykhov, E. G. ;
Matorin, A. D. ;
Savin, S. S. ;
Tishkov, V. I. .
ACTA NATURAE, 2015, 7 (01) :60-69
[2]   A WELL-BEHAVED ELECTROSTATIC POTENTIAL BASED METHOD USING CHARGE RESTRAINTS FOR DERIVING ATOMIC CHARGES - THE RESP MODEL [J].
BAYLY, CI ;
CIEPLAK, P ;
CORNELL, WD ;
KOLLMAN, PA .
JOURNAL OF PHYSICAL CHEMISTRY, 1993, 97 (40) :10269-10280
[3]   Contribution of Dynamic and Static Quenchers for the Study of Protein Conformation in Ionic Liquids by Steady-State Fluorescence Spectroscopy [J].
Bekhouche, Mourad ;
Blum, Loic J. ;
Doumeche, Bastien .
JOURNAL OF PHYSICAL CHEMISTRY B, 2012, 116 (01) :413-423
[4]   GROMACS - A MESSAGE-PASSING PARALLEL MOLECULAR-DYNAMICS IMPLEMENTATION [J].
BERENDSEN, HJC ;
VANDERSPOEL, D ;
VANDRUNEN, R .
COMPUTER PHYSICS COMMUNICATIONS, 1995, 91 (1-3) :43-56
[5]   THE MISSING TERM IN EFFECTIVE PAIR POTENTIALS [J].
BERENDSEN, HJC ;
GRIGERA, JR ;
STRAATSMA, TP .
JOURNAL OF PHYSICAL CHEMISTRY, 1987, 91 (24) :6269-6271
[6]   Molecular dynamics investigation of the ionic liquid/enzyme interface: Application to engineering enzyme surface charge [J].
Burney, Patrick R. ;
Nordwald, Erik M. ;
Hickman, Katie ;
Kaar, Joel L. ;
Pfaendtner, Jim .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2015, 83 (04) :670-680
[7]   Canonical sampling through velocity rescaling [J].
Bussi, Giovanni ;
Donadio, Davide ;
Parrinello, Michele .
JOURNAL OF CHEMICAL PHYSICS, 2007, 126 (01)
[8]  
Campbell I.D.R.A. Dwek., 1984, BIOL SPECTROSCOPY
[9]   Ions from the Hofmeister series and osmolytes: effects on proteins in solution and in the crystallization process [J].
Collins, KD .
METHODS, 2004, 34 (03) :300-311
[10]   Charge density-dependent strength of hydration and biological structure [J].
Collins, KD .
BIOPHYSICAL JOURNAL, 1997, 72 (01) :65-76