ARUZ - Large-scale, massively parallel FPGA-based analyzer of real complex systems

被引：14

作者：

Kielbik, Rafal ^{[1
]}

Halagan, Krzysztof ^{[2
]}

Zatorski, Witold ^{[3
]}

Jung, Jaroslaw ^{[2
]}

Ulanski, Jacek ^{[2
]}

Napieralski, Andrzej ^{[1
]}

Rudnicki, Kamil ^{[1
]}

Amrozik, Piotr ^{[1
]}

Jablonski, Grzegorz ^{[1
]}

Stozek, Dominik ^{[4
]}

Polanowski, Piotr ^{[2
]}

Mudza, Zbigniew ^{[1
]}

Kupis, Joanna ^{[1
]}

Panek, Przemyslaw ^{[5
]}

机构：

[1] Lodz Univ Technol, Dept Microelect & Comp Sci, Ul Wolczanska 221-223, PL-90924 Lodz, Poland

[2] Lodz Univ Technol, Dept Mol Phys, Ul Zeromskiego 116, PL-90924 Lodz, Poland

[3] Forel Witold Zatorski, Ul Ejsmonda 3 M 44, PL-93249 Lodz, Poland

[4] Blue Brick, Ul POW 25, PL-90248 Lodz, Poland

[5] Bionanopark Sp Zoo, Ul Dubois 114-116, PL-93465 Lodz, Poland

来源：

COMPUTER PHYSICS COMMUNICATIONS | 2018年 / 232卷

关键词：

Parallel processing; Reconfigurable systems; Molecular simulations; MOLECULAR-DYNAMICS SIMULATIONS; LIVING COPOLYMERIZATION; GELATION; MONOMER; DLL; INTERDIFFUSION; DIFFUSION;

D O I：

10.1016/j.cpc.2018.06.010

中图分类号：

TP39 [计算机的应用];

学科分类号：

081203 ; 0835 ;

摘要：

This paper presents general information about ARUZ, a scalable, fully parallel data processing system equipped with low-latency communication channels, designed for simulations of interactions among huge number of relatively simple elements. ARUZ consists of approximately 26 000 FPGAs and it can represent a system composed of several million elements consuming barely tens of kilowatts of power. It can be seen as a powerful machine for a wide range of applications. Currently, it implements the Dynamic Lattice Liquid algorithm, which enables studies of dynamic processes and phenomena in dense macromolecular systems. A performance estimation for liquid water shows that in one day ARUZ can model the diffusion of 1.5 million water molecules ongoing in reality for approximately 0.7 ms. (C) 2018 Elsevier B.V. All rights reserved.

引用

页码：22 / 34

页数：13

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