Circleator: flexible circular visualization of genome-associated data with BioPerl and SVG

被引：26

作者：

Crabtree, Jonathan ^{[1
]}

Agrawal, Sonia ^{[1
]}

Mahurkar, Anup ^{[1
]}

Myers, Garry S. ^{[1
,2
,3
,4
]}

Rasko, David A. ^{[1
,2
,4
]}

White, Owen ^{[1
,5
,6
]}

机构：

[1] Univ Maryland, Sch Med, Inst Genome Sci, Baltimore, MD 21201 USA

[2] Univ Maryland, Sch Med, Dept Microbiol & Immunol, Baltimore, MD 21201 USA

[3] Univ Technol Sydney, i3 Inst, Sydney, NSW 2007, Australia

[4] Univ Maryland, Sch Dent, Dept Microbial Pathogenesis, Baltimore, MD 21201 USA

[5] Univ Maryland, Ctr Hlth Related Informat & Bioimaging, College Pk, MD 20740 USA

[6] Univ Maryland, Sch Med, Dept Epidemiol & Publ Hlth, Baltimore, MD 21201 USA

来源：

BIOINFORMATICS | 2014年 / 30卷 / 21期

基金：

美国国家卫生研究院;

关键词：

TOOL;

D O I：

10.1093/bioinformatics/btu505

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Circleator is a Perl application that generates circular figures of genome-associated data. It leverages BioPerl to support standard annotation and sequence file formats and produces publication-quality SVG output. It is designed to be both flexible and easy to use. It includes a library of circular track types and predefined configuration files for common use-cases, including. (i) visualizing gene annotation and DNA sequence data from a GenBank flat file, (ii) displaying patterns of gene conservation in related microbial strains, (iii) showing Single Nucleotide Polymorphisms (SNPs) and indels relative to a reference genome and gene set and (iv) viewing RNA-Seq plots.

引用

页码：3125 / 3127

页数：3

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