MMDB: Entrez's 3D-structure database

被引：119

作者：

Chen, J ^{[1
]}

Anderson, JB ^{[1
]}

DeWeese-Scott, C ^{[1
]}

Fedorova, ND ^{[1
]}

Geer, LY ^{[1
]}

He, SQ ^{[1
]}

Hurwitz, DI ^{[1
]}

Jackson, JD ^{[1
]}

Jacobs, AR ^{[1
]}

Lanczycki, CJ ^{[1
]}

Liebert, CA ^{[1
]}

Liu, CL ^{[1
]}

Madej, T ^{[1
]}

Marchler-Bauer, A ^{[1
]}

Marchler, GH ^{[1
]}

Mazumder, R ^{[1
]}

Nikolskaya, AN ^{[1
]}

Rao, BS ^{[1
]}

Panchenko, AR ^{[1
]}

Shoemaker, BA ^{[1
]}

Simonyan, V ^{[1
]}

Song, JS ^{[1
]}

Thiessen, PA ^{[1
]}

Vasudevan, S ^{[1
]}

Wang, YL ^{[1
]}

Yamashita, RA ^{[1
]}

Yin, JJ ^{[1
]}

Bryant, SH ^{[1
]}

机构：

[1] Natl Lib Med, Natl Ctr Biotechnol Informat, NIH, Bethesda, MD 20894 USA

来源：

NUCLEIC ACIDS RESEARCH | 2003年 / 31卷 / 01期

基金：

美国国家卫生研究院;

关键词：

D O I：

10.1093/nar/gkg086

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

dimensional structures are now known within most protein families and it is likely, when searching a sequence database, that one will identify a homolog of known structure. The goal of Entrez' s 3D- structure database is to make structure information and the functional annotation it can provide easily accessible to molecular biologists. To this end, Entrez' s search engine provides several powerful features: ( i) links between databases, for example between a protein s sequence and structure; ( ii) precomputed sequence and structure neighbors; and ( iii) structure and sequence/ structure alignment visualization. Here, we focus on a new feature of Entrez' s Molecular Modeling Database ( MMDB) : Graphical summaries of the biological annotation available for each 3D structure, based on the results of automated comparative analysis. MMDB is available at: http: / / www. ncbi. nlm. nih. gov/ Entrez/ structure. html.

引用

页码：474 / 477

页数：4

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