Spectral editing at ultra-fast magic-angle-spinning in solid-state NMR: facilitating protein sequential signal assignment by HIGHLIGHT approach

被引:7
|
作者
Wang, Songlin [1 ]
Matsuda, Isamu [1 ]
Long, Fei [1 ]
Ishii, Yoshitaka [1 ,2 ]
机构
[1] Univ Illinois, Dept Chem, Chicago, IL 60607 USA
[2] Univ Illinois, Struct Biol Ctr, Chicago, IL 60607 USA
基金
美国国家科学基金会;
关键词
Fast MAS; Spectral editing; Reverse labeling; Protein; Solid-state NMR; HIGHLIGHT; PHASE PEPTIDE-SYNTHESIS; BETA-AMYLOID FIBRILS; MEMBRANE-PROTEINS; ALZHEIMERS BETA; SENSITIVITY ENHANCEMENT; RESONANCE ASSIGNMENT; SECONDARY-STRUCTURE; LIPID-BILAYERS; DYNAMICS; SPECTROSCOPY;
D O I
10.1007/s10858-016-0014-4
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
This study demonstrates a novel spectral editing technique for protein solid-state NMR (SSNMR) to simplify the spectrum drastically and to reduce the ambiguity for protein main-chain signal assignments in fast magic-angle-spinning (MAS) conditions at a wide frequency range of 40-80 kHz. The approach termed HIGHLIGHT (Wang et al., in Chem Comm 51:15055-15058, 2015) combines the reverse C-13, N-15-isotope labeling strategy and selective signal quenching using the frequency-selective REDOR pulse sequence under fast MAS. The scheme allows one to selectively observe the signals of "highlighted" labeled amino-acid residues that precede or follow unlabeled residues through selectively quenching (CO)-C-13 or N-15 signals for a pair of consecutively labeled residues by recoupling (CO)-C-13-N-15 dipolar couplings. Our numerical simulation results showed that the scheme yielded only similar to 15 % loss of signals for the highlighted residues while quenching as much as similar to 90 % of signals for non-highlighted residues. For lysine-reverse-labeled micro-crystalline GB1 protein, the 2D N-15/C-13(alpha) correlation and 2D C-13(alpha)/(CO)-C-13 correlation SSNMR spectra by the HIGHLIGHT approach yielded signals only for six residues following and preceding the unlabeled lysine residues, respectively. The experimental dephasing curves agreed reasonably well with the corresponding simulation results for highlighted and quenched residues at spinning speeds of 40 and 60 kHz. The compatibility of the HIGHLIGHT approach with fast MAS allows for sensitivity enhancement by paramagnetic assisted data collection (PACC) and H-1 detection. We also discuss how the HIGHLIGHT approach facilitates signal assignments using C-13-detected 3D SSNMR by demonstrating full sequential assignments of lysine-reverse-labeled micro-crystalline GB1 protein (similar to 300 nmol), for which data collection required only 11 h. The HIGHLIGHT approach offers valuable means of signal assignments especially for larger proteins through reducing the number of resonance and clarifying multiple starting points in sequential assignment with enhanced sensitivity.
引用
收藏
页码:131 / 141
页数:11
相关论文
共 50 条
  • [31] High-resolution paramagnetically enhanced solid-state NMR spectroscopy of membrane proteins at fast magic angle spinning
    Meaghan E. Ward
    Shenlin Wang
    Sridevi Krishnamurthy
    Howard Hutchins
    Michael Fey
    Leonid S. Brown
    Vladimir Ladizhansky
    Journal of Biomolecular NMR, 2014, 58 : 37 - 47
  • [32] Nano-mole scale sequential signal assignment by 1H-detected protein solid-state NMR
    Wang, Songlin
    Parthasarathy, Sudhakar
    Xiao, Yiling
    Nishiyama, Yusuke
    Long, Fei
    Matsuda, Isamu
    Endo, Yuki
    Nemoto, Takahiro
    Yamauchi, Kazuo
    Asakura, Tetsuo
    Takeda, Mitsuhiro
    Terauchi, Tsutomu
    Kainosho, Masatsune
    Ishii, Yoshitaka
    CHEMICAL COMMUNICATIONS, 2015, 51 (81) : 15055 - 15058
  • [33] Is protein deuteration beneficial for proton detected solid-state NMR at and above 100 kHz magic-angle spinning?
    Cala-De Paepe, Diane
    Stanek, Jan
    Jaudzems, Kristaps
    Tars, Kaspars
    Andreas, Loren B.
    Pintacuda, Guido
    SOLID STATE NUCLEAR MAGNETIC RESONANCE, 2017, 87 : 126 - 136
  • [34] Systematic evaluation of heteronuclear spin decoupling in solid-state NMR at the rotary-resonance conditions in the regime of fast magic-angle spinning
    Sharma, Kshama
    Madhu, P. K.
    Agarwal, Vipin
    JOURNAL OF MAGNETIC RESONANCE, 2016, 270 : 136 - 141
  • [35] Combination of 15N reverse labeling and afterglow spectroscopy for assigning membrane protein spectra by magic-angle-spinning solid-state NMR: application to the multidrug resistance protein EmrE
    James R. Banigan
    Anindita Gayen
    Nathaniel J. Traaseth
    Journal of Biomolecular NMR, 2013, 55 : 391 - 399
  • [36] Utilizing Afterglow Magnetization from Cross-Polarization Magic-Angle-Spinning Solid-State NMR Spectroscopy to Obtain Simultaneous Heteronuclear Multidimensional Spectra
    Banigan, James R.
    Traaseth, Nathaniel J.
    JOURNAL OF PHYSICAL CHEMISTRY B, 2012, 116 (24) : 7138 - 7144
  • [37] Relative merits of rCWA and XiX heteronuclear spin decoupling in solid-state magic-angle-spinning NMR spectroscopy: A bimodal Floquet analysis
    Equbal, Asif
    Leskes, Michal
    Nielsen, Niels Chr.
    Madhu, P. K.
    Vega, Shimon
    JOURNAL OF MAGNETIC RESONANCE, 2016, 263 : 55 - 64
  • [38] Sensitivity enhancement, assignment, and distance measurement in 13C solid-state NMR spectroscopy for paramagnetic systems under fast magic angle spinning
    Wickramasinghe, Nalinda P.
    Ishii, Yoshitaka
    JOURNAL OF MAGNETIC RESONANCE, 2006, 181 (02) : 233 - 243
  • [39] Revealing weak histidine 15N homonuclear scalar couplings using Solid-State Magic-Angle-Spinning NMR spectroscopy
    Tan, Chunhua
    Chen, Yuquan
    Peng, Xinhua
    Chen, Zhong
    Cai, Shuhui
    Cross, Timothy A.
    Fu, Riqiang
    JOURNAL OF MAGNETIC RESONANCE, 2020, 316
  • [40] Deuteration for High-Resolution Detection of Protons in Protein Magic Angle Spinning (MAS) Solid-State NMR
    Reif, Bernd
    CHEMICAL REVIEWS, 2022, 122 (10) : 10019 - 10035