Spectral editing at ultra-fast magic-angle-spinning in solid-state NMR: facilitating protein sequential signal assignment by HIGHLIGHT approach
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作者:
Wang, Songlin
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机构:
Univ Illinois, Dept Chem, Chicago, IL 60607 USAUniv Illinois, Dept Chem, Chicago, IL 60607 USA
Wang, Songlin
[1
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Matsuda, Isamu
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机构:
Univ Illinois, Dept Chem, Chicago, IL 60607 USAUniv Illinois, Dept Chem, Chicago, IL 60607 USA
Matsuda, Isamu
[1
]
Long, Fei
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机构:
Univ Illinois, Dept Chem, Chicago, IL 60607 USAUniv Illinois, Dept Chem, Chicago, IL 60607 USA
Long, Fei
[1
]
Ishii, Yoshitaka
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机构:
Univ Illinois, Dept Chem, Chicago, IL 60607 USA
Univ Illinois, Struct Biol Ctr, Chicago, IL 60607 USAUniv Illinois, Dept Chem, Chicago, IL 60607 USA
Ishii, Yoshitaka
[1
,2
]
机构:
[1] Univ Illinois, Dept Chem, Chicago, IL 60607 USA
[2] Univ Illinois, Struct Biol Ctr, Chicago, IL 60607 USA
This study demonstrates a novel spectral editing technique for protein solid-state NMR (SSNMR) to simplify the spectrum drastically and to reduce the ambiguity for protein main-chain signal assignments in fast magic-angle-spinning (MAS) conditions at a wide frequency range of 40-80 kHz. The approach termed HIGHLIGHT (Wang et al., in Chem Comm 51:15055-15058, 2015) combines the reverse C-13, N-15-isotope labeling strategy and selective signal quenching using the frequency-selective REDOR pulse sequence under fast MAS. The scheme allows one to selectively observe the signals of "highlighted" labeled amino-acid residues that precede or follow unlabeled residues through selectively quenching (CO)-C-13 or N-15 signals for a pair of consecutively labeled residues by recoupling (CO)-C-13-N-15 dipolar couplings. Our numerical simulation results showed that the scheme yielded only similar to 15 % loss of signals for the highlighted residues while quenching as much as similar to 90 % of signals for non-highlighted residues. For lysine-reverse-labeled micro-crystalline GB1 protein, the 2D N-15/C-13(alpha) correlation and 2D C-13(alpha)/(CO)-C-13 correlation SSNMR spectra by the HIGHLIGHT approach yielded signals only for six residues following and preceding the unlabeled lysine residues, respectively. The experimental dephasing curves agreed reasonably well with the corresponding simulation results for highlighted and quenched residues at spinning speeds of 40 and 60 kHz. The compatibility of the HIGHLIGHT approach with fast MAS allows for sensitivity enhancement by paramagnetic assisted data collection (PACC) and H-1 detection. We also discuss how the HIGHLIGHT approach facilitates signal assignments using C-13-detected 3D SSNMR by demonstrating full sequential assignments of lysine-reverse-labeled micro-crystalline GB1 protein (similar to 300 nmol), for which data collection required only 11 h. The HIGHLIGHT approach offers valuable means of signal assignments especially for larger proteins through reducing the number of resonance and clarifying multiple starting points in sequential assignment with enhanced sensitivity.
机构:
Natl High Magnet Field Lab, Tallahassee, FL 32310 USAPenn State Univ, Dept Biochem & Mol Biol, Hershey, PA 17033 USA
Fu, Riqiang
Wang, Xingsheng
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Penn State Univ, Dept Biochem & Mol Biol, Hershey, PA 17033 USAPenn State Univ, Dept Biochem & Mol Biol, Hershey, PA 17033 USA
Wang, Xingsheng
Li, Conggang
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机构:
Chinese Acad Sci, Wuhan Inst Phys & Math, State Key Lab Magnet Resonance & Atom & Mol Phys, Wuhan 430071, Peoples R ChinaPenn State Univ, Dept Biochem & Mol Biol, Hershey, PA 17033 USA
Li, Conggang
Santiago-Miranda, Adriana N.
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机构:
Univ Puerto Rico, Dept Chem Engn, Mayaguez, PR 00681 USAPenn State Univ, Dept Biochem & Mol Biol, Hershey, PA 17033 USA
Santiago-Miranda, Adriana N.
Pielak, Gary J.
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机构:
Univ N Carolina, Dept Chem, Chapel Hill, NC 27599 USAPenn State Univ, Dept Biochem & Mol Biol, Hershey, PA 17033 USA
Pielak, Gary J.
Tian, Fang
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机构:
Penn State Univ, Dept Biochem & Mol Biol, Hershey, PA 17033 USAPenn State Univ, Dept Biochem & Mol Biol, Hershey, PA 17033 USA
机构:
Dept Chem, Chicago, IL 60637 USA
Univ Illinois, Chicago, IL USADept Chem, Chicago, IL 60637 USA
Wang, Songlin
Parthasarathy, Sudhakar
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机构:
Dept Chem, Chicago, IL 60637 USA
Univ Illinois, Chicago, IL USADept Chem, Chicago, IL 60637 USA
Parthasarathy, Sudhakar
Nishiyama, Yusuke
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机构:
JEOL RESONANCE Inc, Akishima, Tokyo, Japan
RIKEN, CLST JEOL Collaborat Ctr, Yokohama, Kanagawa, JapanDept Chem, Chicago, IL 60637 USA
Nishiyama, Yusuke
Endo, Yuki
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机构:
JEOL RESONANCE Inc, Akishima, Tokyo, JapanDept Chem, Chicago, IL 60637 USA
Endo, Yuki
Nemoto, Takahiro
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机构:
JEOL RESONANCE Inc, Akishima, Tokyo, JapanDept Chem, Chicago, IL 60637 USA
Nemoto, Takahiro
Yamauchi, Kazuo
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机构:
Nazarbayev Univ, Sch Sci & Technol, Astana, Kazakhstan
King Abdullah Univ Sci & Technol, Nucl Magnet Resonance Core Lab, Thuwal, Saudi ArabiaDept Chem, Chicago, IL 60637 USA
Yamauchi, Kazuo
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机构:
Asakura, Tetsuo
Takeda, Mitsuhiro
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机构:
Nagoya Univ, Struct Biol Res Ctr, Grad Sch Sci, Chikusa Ku, Nagoya, Aichi 4648601, JapanDept Chem, Chicago, IL 60637 USA
Takeda, Mitsuhiro
Terauchi, Tsutomu
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机构:
SAIL Technol Co Inc, Tsurumi Ku, Yokohama, Kanagawa, JapanDept Chem, Chicago, IL 60637 USA
Terauchi, Tsutomu
Kainosho, Masatsune
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机构:
Nagoya Univ, Struct Biol Res Ctr, Grad Sch Sci, Chikusa Ku, Nagoya, Aichi 4648601, Japan
Tokyo Metropolitan Univ, Ctr Prior Areas, Tokyo 158, JapanDept Chem, Chicago, IL 60637 USA
Kainosho, Masatsune
Ishii, Yoshitaka
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机构:
Dept Chem, Chicago, IL 60637 USA
Univ Illinois, Chicago, IL USA
Univ Illinois, Struct Biol Ctr, Chicago, IL USADept Chem, Chicago, IL 60637 USA