Engineered internal noise stochastic resonator in gene network: A model study

被引:9
作者
Wang, Zhiwei
Hou, Zhonghuai
Xin, Houwen
Zhang, Zhizhou
机构
[1] Tianjin Univ Sci & Technol, Coll Food Engn & Biotechnol, Teda Bio X Res Ctr, Tianjin 300457, Peoples R China
[2] Univ Sci & Technol China, Dept Chem Phys, Hefei 230026, Anhui, Peoples R China
基金
中国国家自然科学基金;
关键词
synthetic gene network; stochastic resonance; internal noise; bistable switch; state-to-state transition;
D O I
10.1016/j.bpc.2006.09.006
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Based on a genetic bistable switch model coupled with a gene oscillator model, we have constructed a mesoscopic stochastic model for the coupled synthetic gene network, and studied how internal noise would influence the oscillation of such a system. We found that the state-to-state transitions can occur if the internal noise is taken into account, and the performance of resulting oscillation can reach a maximum in a certain internal noise level, which indicates the occurrence of internal noise stochastic resonance (SR) and makes the coupled gene network work as a stochastic resonator. The potential role of such an effect on gene expression systems is also discussed. (c) 2006 Published by Elsevier B.V.
引用
收藏
页码:281 / 285
页数:5
相关论文
共 25 条
  • [1] Biological rhythms - Circadian clocks limited by noise
    Barkai, N
    Leibler, S
    [J]. NATURE, 2000, 403 (6767) : 267 - 268
  • [2] Noise in eukaryotic gene expression
    Blake, WJ
    Kærn, M
    Cantor, CR
    Collins, JJ
    [J]. NATURE, 2003, 422 (6932) : 633 - 637
  • [3] Molecular bases for circadian clocks
    Dunlap, JC
    [J]. CELL, 1999, 96 (02) : 271 - 290
  • [4] Stochastic gene expression in a single cell
    Elowitz, MB
    Levine, AJ
    Siggia, ED
    Swain, PS
    [J]. SCIENCE, 2002, 297 (5584) : 1183 - 1186
  • [5] Construction of a genetic toggle switch in Escherichia coli
    Gardner, TS
    Cantor, CR
    Collins, JJ
    [J]. NATURE, 2000, 403 (6767) : 339 - 342
  • [6] The chemical Langevin equation
    Gillespie, DT
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2000, 113 (01) : 297 - 306
  • [7] EXACT STOCHASTIC SIMULATION OF COUPLED CHEMICAL-REACTIONS
    GILLESPIE, DT
    [J]. JOURNAL OF PHYSICAL CHEMISTRY, 1977, 81 (25) : 2340 - 2361
  • [8] Robustness of circadian rhythms with respect to molecular noise
    Gonze, D
    Halloy, J
    Goldbeter, A
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (02) : 673 - 678
  • [9] A bottom-up approach to gene regulation
    Guido, NJ
    Wang, X
    Adalsteinsson, D
    McMillen, D
    Hasty, J
    Cantor, CR
    Elston, TC
    Collins, JJ
    [J]. NATURE, 2006, 439 (7078) : 856 - 860
  • [10] Noise-based switches and amplifiers for gene expression
    Hasty, J
    Pradines, J
    Dolnik, M
    Collins, JJ
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (05) : 2075 - 2080