Finite size corrections to random Boolean networks

被引:8
|
作者
Leone, Michele
Pagnani, Andrea
Parisi, Giorgio
Zagordi, Osvaldo
机构
[1] ISI Fdn, I-10133 Turin, Italy
[2] Univ Roma La Sapienza, Dipartimento Fis, I-00185 Rome, Italy
[3] Scuola Int Super Studi Avanzati, ISAS, I-34014 Trieste, Italy
来源
JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT | 2006年
关键词
message-passing algorithms; random graphs; networks;
D O I
10.1088/1742-5468/2006/12/P12012
中图分类号
O3 [力学];
学科分类号
08 ; 0801 ;
摘要
Since their introduction, Boolean networks have been traditionally studied in view of their rich dynamical behaviour under different update protocols and for their qualitative analogy with cell regulatory networks. More recently, tools borrowed from the statistical physics of disordered systems and from computer science have provided a more complete characterization of their equilibrium behaviour. However, the largest number of results have been obtained in the thermodynamic limit, which is often far from being reached when dealing with realistic instances of the problem. The numerical analysis presented here aims at comparing-for a specific family of models-the outcomes given by the heuristic belief propagation algorithm with those given by exhaustive enumeration. In the second part of the paper some analytical considerations on the validity of the annealed approximation are discussed.
引用
收藏
页数:18
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