Dynamical decision making in a genetic perceptron

被引:5
作者
Filicheva, Svetlana [1 ]
Zaikin, Alexey [1 ,2 ,3 ]
Kanakov, Oleg [1 ]
机构
[1] Lobachevsky State Univ Nizhniy Novgorod, Prospekt Gagarina 23, Nizhnii Novgorod 603950, Russia
[2] UCL, Dept Math, Gower St, London WC1E 6BT, England
[3] UCL, Inst Womens Hlth, Med Sch Bldg 74,Huntley St, London WC1E 6AU, England
基金
俄罗斯基础研究基金会;
关键词
Synthetic genetic networks; Classification; Stochastic resonance; NOTCH;
D O I
10.1016/j.physd.2015.11.008
中图分类号
O29 [应用数学];
学科分类号
070104 ;
摘要
Decision making is an essential element of cell functioning, which determines milestones of its evolution including differentiation, apoptosis and possible transition to cancerous state. Recently the concept of stochastic resonance in decision making (SRIDM) was introduced, demonstrated and explained using a synthetic genetic classifier circuit as an example. It manifests itself as a maximum in the dependence of classification accuracy upon noise intensity, and was caused by the concurrent action of two factors, both coarsening the classification accuracy by themselves, but found to extenuate the effect of each other: perturbation of classifier threshold and additive noise in classifier inputs. In the present work we extend the SRIDM concept to dynamical decision making, in which a classifier keeps track of the changeable input. We reproduce the stochastic resonance effect caused by noise and threshold perturbation, and demonstrate a new mechanism of SRIDM, which is associated with bistability and not connected with threshold perturbation. (C) 2015 Elsevier B.V. All rights reserved.
引用
收藏
页码:112 / 115
页数:4
相关论文
共 12 条
[1]   Effect of Noise in Intelligent Cellular Decision Making [J].
Bates, Russell ;
Blyuss, Oleg ;
Alsaedi, Ahmed ;
Zaikin, Alexey .
PLOS ONE, 2015, 10 (05)
[2]   COMPUTER-SIMULATED EVOLUTION OF A NETWORK OF CELL-SIGNALING MOLECULES [J].
BRAY, D ;
LAY, S .
BIOPHYSICAL JOURNAL, 1994, 66 (04) :972-977
[3]   Dynamic Filopodia Transmit Intermittent Delta-Notch Signaling to Drive Pattern Refinement during Lateral Inhibition [J].
Cohen, Michael ;
Georgiou, Marios ;
Stevenson, Nicola L. ;
Miodownik, Mark ;
Baum, Buzz .
DEVELOPMENTAL CELL, 2010, 19 (01) :78-89
[4]   Bifurcation dynamics in lineage-commitment in bipotent progenitor cells [J].
Huang, Sui ;
Guo, Yan-Ping ;
May, Gillian ;
Enver, Tariq .
DEVELOPMENTAL BIOLOGY, 2007, 305 (02) :695-713
[5]   Nonequilibrium noise-induced phase transitions in simple systems [J].
Landa, PS ;
Zaikin, AA .
JOURNAL OF EXPERIMENTAL AND THEORETICAL PHYSICS, 1997, 84 (01) :197-208
[6]   The 20S Proteasome Splicing Activity Discovered by SpliceMet [J].
Liepe, Juliane ;
Mishto, Michele ;
Textoris-Taube, Kathrin ;
Janek, Katharina ;
Keller, Christin ;
Henklein, Petra ;
Kloetzel, Peter Michael ;
Zaikin, Alexey .
PLOS COMPUTATIONAL BIOLOGY, 2010, 6 (06) :1-12
[7]   It's a noisy business! Genetic regulation at the nanomolar scale [J].
McAdams, HH ;
Arkin, A .
TRENDS IN GENETICS, 1999, 15 (02) :65-69
[8]   A complex barcode underlies the heterogeneous response of p53 to stress [J].
Murray-Zmijewski, Fiona ;
Slee, Elizabeth A. ;
Lu, Xin .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2008, 9 (09) :702-712
[9]   Speed-Dependent Cellular Decision Making in Nonequilibrium Genetic Circuits [J].
Nene, Nuno R. ;
Garca-Ojalvo, Jordi ;
Zaikin, Alexey .
PLOS ONE, 2012, 7 (03)
[10]   Cis-interactions between Notch and Delta generate mutually exclusive signalling states [J].
Sprinzak, David ;
Lakhanpal, Amit ;
LeBon, Lauren ;
Santat, Leah A. ;
Fontes, Michelle E. ;
Anderson, Graham A. ;
Garcia-Ojalvo, Jordi ;
Elowitz, Michael B. .
NATURE, 2010, 465 (7294) :86-U95