Comparative mitogenomics and phylogenetics of the stinging wasps (Hymenoptera: Aculeata)

被引:16
作者
Zheng, Xiao-Yu [1 ,2 ]
Cao, Li-Jun [2 ]
Chen, Peng-Yan [1 ,2 ]
Chen, Xue-Xin [3 ,4 ]
van Achterberg, Kees [3 ,4 ]
Hoffmann, Ary Anthony [5 ]
Liu, Jing-Xian [1 ]
Wei, Shu-Jun [2 ]
机构
[1] South China Agr Univ, Coll Plant Protect, Dept Entomol, Guangzhou 510642, Peoples R China
[2] Beijing Acad Agr & Forestry Sci, Inst Plant & Environm Protect, Beijing 100097, Peoples R China
[3] Zhejiang Univ, State Key Lab Rice Biol, Inst Insect Sci, Hangzhou 310058, Peoples R China
[4] Zhejiang Univ, Minist Agr, Key Lab Agr Entomol, Hangzhou 310058, Peoples R China
[5] Univ Melbourne, Sch Biosci, Bio21 Inst, Melbourne, Vic 3010, Australia
基金
中国国家自然科学基金;
关键词
Hymenoptera; Aculeata; Mitochondrial genome; Gene rearrangement; Phylogeny; COMPLETE MITOCHONDRIAL GENOME; MULTIPLE SEQUENCE ALIGNMENT; GENE REARRANGEMENTS; MOLECULAR PHYLOGENY; EVOLUTIONARY DYNAMICS; ORDER; SOFTWARE; ANTS; RECONSTRUCTION; SUBSTITUTION;
D O I
10.1016/j.ympev.2021.107119
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The stinging wasps (Hymenoptera: Aculeata) include diverse groups such as vespid wasps, ants and bees. Phylogenetic relationships among major lineages of stinging wasps have been inferred from molecular and morphological data. However, the genomic features of the mitochondrial genomes and their phylogenetic utility remain to be explored. In this study, we determined 23 mitochondrial genomes from the Aculeata. Four Mutillidae species showed relatively low A + T content compared to other species of the Aculeata (69.7%? 77.4%). Eleven out of 44 species, mainly from the Chrysididae and the Pompilidae, showed reversals of GC skews. Gene rearrangements occurred across the species. Patterns of tRNA rearrangement were conserved in some groups, including the Chrysididae, Bethylidae, Pompilidae, Scolioidea and Vespoidea. Rearrangement of protein-coding genes were found in 12 out of 44 species of the Aculeata, including all four species from the Chrysididae, both species from the Bethylidae, one species from the Dryinidae, all three Scolioidea species and two Apoidea species. Phylogenetic inference showed a long branch in species with unusual genomic features, such as in the Mutillidae and Bethylidae. By excluding these species, we found paraphyly of the Chrysidoidea and a sister group relationship between the Formicoidea and Vespoidea. These results improve our understanding of the evolution of mitochondrial genomes in the Aculeata and, in general, the evolution across this subclade.
引用
收藏
页数:9
相关论文
共 74 条
[1]  
Andrews S, 2010, FASTQC QUALITY CONTR
[2]  
Ayres DL, 2012, SYST BIOL, V61, P170, DOI [10.1093/sysbio/syr100, 10.1093/sysbio/sys029]
[3]   Is It an Ant or a Butterfly? Convergent Evolution in the Mitochondrial Gene Order of Hymenoptera and Lepidoptera [J].
Babbucci, Massimiliano ;
Basso, Andrea ;
Scupola, Antonio ;
Patarnello, Tomaso ;
Negrisolo, Enrico .
GENOME BIOLOGY AND EVOLUTION, 2014, 6 (12) :3326-3343
[4]   Characterisation of the complete mitochondrial genome and 13 microsatellite loci through next-generation sequencing for the New Caledonian spider-ant Leptomyrmex pallens [J].
Berman, Maia ;
Austin, Chris M. ;
Miller, Adam D. .
MOLECULAR BIOLOGY REPORTS, 2014, 41 (03) :1179-1187
[5]   MITOS: Improved de novo metazoan mitochondrial genome annotation [J].
Bernt, Matthias ;
Donath, Alexander ;
Juehling, Frank ;
Externbrink, Fabian ;
Florentz, Catherine ;
Fritzsch, Guido ;
Puetz, Joern ;
Middendorf, Martin ;
Stadler, Peter F. .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2013, 69 (02) :313-319
[6]   Trimmomatic: a flexible trimmer for Illumina sequence data [J].
Bolger, Anthony M. ;
Lohse, Marc ;
Usadel, Bjoern .
BIOINFORMATICS, 2014, 30 (15) :2114-2120
[7]   Gene translocation links insects and crustaceans [J].
Boore, JL ;
Lavrov, DV ;
Brown, WM .
NATURE, 1998, 392 (6677) :667-668
[8]   Big trees from little genomes: mitochondrial gene order as a phylogenetic tool [J].
Boore, JL ;
Brown, WM .
CURRENT OPINION IN GENETICS & DEVELOPMENT, 1998, 8 (06) :668-674
[9]  
Brady Sean G., 2009, P264
[10]   Phylogenomic Insights into the Evolution of Stinging Wasps and the Origins of Ants and Bees [J].
Branstetter, Michael G. ;
Danforth, Bryan N. ;
Pitts, James P. ;
Faircloth, Brant C. ;
Ward, Philip S. ;
Buffington, Matthew L. ;
Gates, Michael W. ;
Kula, Robert R. ;
Brady, Sean G. .
CURRENT BIOLOGY, 2017, 27 (07) :1019-1025