Development and characterization of 26 novel microsatellite loci for the trochid gastropod Gibbula divaricata (Linnaeus, 1758), using Illumina MiSeq next generation sequencing technology

被引:9
作者
Lopez-Marquez, Violeta [1 ]
Garcia-Jimenez, Ricardo
Templado, Jose [2 ]
Machordom, Annie [1 ]
机构
[1] CSIC, Museo Nacl Ciencias Nat, Biodiversidad & Biol Evolut, E-28006 Madrid, Spain
[2] CSIC, Museo Nacl Ciencias Nat, Mol Systemat Lab, E-28006 Madrid, Spain
来源
PEERJ | 2016年 / 4卷
关键词
Microsatellite; Genetic structure; Population genetics; Cross amplification; Hybridization; Gibbula varia; Gibbula rarilineata; Mediterranean sea; CROSS-SPECIES AMPLIFICATION; POPULATION CONNECTIVITY; SOFTWARE; DISPERSAL; MARKERS; OYSTER;
D O I
10.7717/peerj.1789
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
In the present study we used the high-throughput sequencing technology Illumina MiSeq to develop 26 polymorphic microsatellite loci for the marine snail Gibbula divaricata. Four to 32 alleles were detected per locus across 30 samples analyzed. Observed and expected heterozygosities ranged from 0.130 to 0.933 and from 0.294 to 0.956, respectively. No significant linkage disequilibrium existed. Seven loci deviated from Hardy-Weinberg equilibrium that could not totally be explained by the presence of null alleles. Sympatric distribution with other species of the genus Gibbula, as G. rarilineata and G. varia, lead us to test the cross utility of the developed markers in these two species, which could be useful to test common biogeographic patterns or potential hybridization phenomena, since morphological intermediate specimens were found.
引用
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页数:11
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