In-crystal reaction cycle of a toluene-bound diiron hydroxylase

被引:40
作者
Acheson, Justin F. [1 ]
Bailey, Lucas J. [1 ]
Brunold, Thomas C. [2 ]
Fox, Brian G. [1 ]
机构
[1] Univ Wisconsin, Dept Biochem, Madison, WI 53706 USA
[2] Univ Wisconsin, Dept Chem, Madison, WI 53706 USA
基金
美国国家科学基金会;
关键词
REDUCED METHANE MONOOXYGENASE; AROMATIC HYDROXYLATION; DEOXYHYPUSINE HYDROXYLASE; DIOXYGEN ACTIVATION; INTERMEDIATE; MECHANISM; COMPLEX; 4-MONOOXYGENASE; DESATURASE; OXIDATION;
D O I
10.1038/nature21681
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Electrophilic aromatic substitution is one of the most important and recognizable classes of organic chemical transformation. Enzymes create the strong electrophiles that are needed for these highly energetic reactions by using O-2, electrons, and metals or other cofactors. Although the nature of the oxidants that carry out electrophilic aromatic substitution has been deduced from many approaches, it has been difficult to determine their structures. Here we show the structure of a diiron hydroxylase intermediate formed during a reaction with toluene. Density functional theory geometry optimizations of an active site model reveal that the intermediate is an arylperoxo Fe2+/Fe3+ species with delocalized aryl radical character. The structure suggests that a carboxylate ligand of the diiron centre may trigger homolytic cleavage of the O-O bond by transferring a proton from a metal-bound water. Our work provides the spatial and electronic constraints needed to propose a comprehensive mechanism for diiron enzyme arene hydroxylation that accounts for many prior experimental results.
引用
收藏
页码:191 / +
页数:15
相关论文
共 49 条
  • [41] Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
    Sievers, Fabian
    Wilm, Andreas
    Dineen, David
    Gibson, Toby J.
    Karplus, Kevin
    Li, Weizhong
    Lopez, Rodrigo
    McWilliam, Hamish
    Remmert, Michael
    Soeding, Johannes
    Thompson, Julie D.
    Higgins, Desmond G.
    [J]. MOLECULAR SYSTEMS BIOLOGY, 2011, 7
  • [42] Structure/function correlations over binuclear non-heme iron active sites
    Solomon, Edward I.
    Park, Kiyoung
    [J]. JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 2016, 21 (5-6): : 575 - 588
  • [43] Geometric and Electronic Structure Contributions to Function in Non-heme Iron Enzymes
    Solomon, Edward I.
    Light, Kenneth M.
    Liu, Lei V.
    Srnec, Martin
    Wong, Shaun D.
    [J]. ACCOUNTS OF CHEMICAL RESEARCH, 2013, 46 (11) : 2725 - 2739
  • [44] Active Site Threonine Facilitates Proton Transfer during Dioxygen Activation at the Diiron Center of Toluene/o-Xylene Monooxygenase Hydroxylase
    Song, Woon Ju
    McCormick, Michael S.
    Behan, Rachel K.
    Sazinsky, Matthew H.
    Jiang, Wei
    Lin, Jeffery
    Krebs, Carsten
    Lippard, Stephen J.
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2010, 132 (39) : 13582 - 13585
  • [45] Molecular replacement with MOLREP
    Vagin, Alexei
    Teplyakov, Alexei
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2010, 66 : 22 - 25
  • [46] Human deoxyhypusine hydroxylase, an enzyme involved in regulating cell growth, activates O2 with a nonheme diiron center
    Vu, Van V.
    Emerson, Joseph P.
    Martinho, Marlene
    Kim, Yeon Sook
    Muenck, Eckard
    Park, Myung Hee
    Que, Lawrence, Jr.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (35) : 14814 - 14819
  • [47] Organophosphonate-degrading PhnZ reveals an emerging family of HD domain mixed-valent diiron oxygenases
    Woersdoerfer, Bigna
    Lingaraju, Mahesh
    Yennawar, Neela H.
    Boal, Amie K.
    Krebs, Carsten
    Bollinger, J. Martin, Jr.
    Pandelia, Maria-Eirini
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, 110 (47) : 18874 - 18879
  • [48] Evidence for C-H cleavage by an iron-superoxide complex in the glycol cleavage reaction catalyzed by myo-inositol oxygenase
    Xing, G
    Diao, YH
    Hoffart, LM
    Barr, EW
    Prabhu, KS
    Arner, RJ
    Reddy, CC
    Krebs, C
    Bollinger, JM
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (16) : 6130 - 6135
  • [49] (μ-1,2-peroxo)diiron(III/III) complex as a precursor to the Diiron(III/IV) intermediate X in the assembly of the iron-radical cofactor of ribonucleotide reductase from mouse
    Yun, Danny
    Garcia-Serres, Ricardo
    Chicalese, Brandon M.
    An, Young H.
    Huynh, Boi Hanh
    Bollinger, J. Martin, Jr.
    [J]. BIOCHEMISTRY, 2007, 46 (07) : 1925 - 1932