Transcriptomic analysis reveals responses to Cycloastragenol in Arabidopsis thaliana

被引:6
|
作者
Mhiri, Wissem [1 ]
Ceylan, Merve [2 ]
Turgut-Kara, Neslihan [3 ]
Nalbantoglu, Barbaros [1 ]
Cakir, Ozgur [3 ]
机构
[1] Yildiz Tech Univ, Fac Art & Sci, Chem Dept, Istanbul, Turkey
[2] Istanbul Univ, Inst Sci, Program Mol Biol & Genet, Istanbul, Turkey
[3] Istanbul Univ, Fac Sci, Dept Mol Biol & Genet, Istanbul, Turkey
来源
PLOS ONE | 2020年 / 15卷 / 12期
关键词
RNA-SEQ; GENE-EXPRESSION; IRON;
D O I
10.1371/journal.pone.0242986
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Cycloastragenol (CAG), a molecule isolated from 'Astragalus membranaceus', stimulates the telomerase activity and cell proliferation significantly. It has been proven that CAG has the ability to prevent some diseases in humans. In this study, we aimed to figure out the CAG effects on the different signaling mechanisms in plants and to broadly analyze the genome-wide transcriptional responses in order to demonstrate CAG as a new key molecule that can potentially help plants to overcome different environmental stresses. RNA-seq strategy was employed to assess the transcriptional profiles in A. thaliana calli. Our work primarily focused on an overall study on the transcriptomic responses of A. thaliana to CAG. A total of 22593 unigenes have been detected, among which 1045 unigenes associated with 213 GO terms were differentially expressed and were assigned to 118 KEGG pathways. The up-regulated genes are principally involved in cellular and metabolic processes in addition to the response to a stimulus. The data analysis revealed genes associated with defense signaling pathways such as cytochrome P450s transporter, antioxidant system genes, and stress-responsive protein families were significantly upregulated. The obtained results can potentially help in better understanding biotic and/or abiotic tolerance mechanisms in response to CAG.
引用
收藏
页数:19
相关论文
共 50 条
  • [41] Phylogenetic and transcriptional analysis of a strictosidine synthase-like gene family in Arabidopsis thaliana reveals involvement in plant defence responses
    Sohani, M. M.
    Schenk, P. M.
    Schultz, C. J.
    Schmidt, O.
    PLANT BIOLOGY, 2009, 11 (01) : 105 - 117
  • [42] Transcriptomic analysis of poco1, a mitochondrial pentatricopeptide repeat protein mutant in Arabidopsis thaliana
    Hossein Emami
    Abhishek Kumar
    Frank Kempken
    BMC Plant Biology, 20
  • [43] Large-scale comparative transcriptomic analysis of temperature-responsive genes in Arabidopsis thaliana
    Napaporn Sriden
    Varodom Charoensawan
    Plant Molecular Biology, 2022, 110 : 425 - 443
  • [44] Transcriptomic analysis of poco1, a mitochondrial pentatricopeptide repeat protein mutant in Arabidopsis thaliana
    Emami, Hossein
    Kumar, Abhishek
    Kempken, Frank
    BMC PLANT BIOLOGY, 2020, 20 (01)
  • [45] Large-scale comparative transcriptomic analysis of temperature-responsive genes in Arabidopsis thaliana
    Sriden, Napaporn
    Charoensawan, Varodom
    PLANT MOLECULAR BIOLOGY, 2022, 110 (4-5) : 425 - 443
  • [46] Integrative Transcriptomic Analysis Uncovers Novel Gene Modules That Underlie the Sulfate Response in Arabidopsis thaliana
    Henriquez-Valencia, Carlos
    Arenas-M, Anita
    Medina, Joaquin
    Canales, Javier
    FRONTIERS IN PLANT SCIENCE, 2018, 9
  • [47] Transcriptomic Analysis of Soil-Grown Arabidopsis thaliana Roots and Shoots in Response to a Drought Stress
    Rasheed, Sultana
    Bashir, Khurram
    Matsui, Akihiro
    Tanaka, Maho
    Seki, Motoaki
    FRONTIERS IN PLANT SCIENCE, 2016, 7
  • [48] Molecular responses to water stress in Arabidopsis thaliana
    Shinozaki, K
    Yamaguchi-Shinozaki, K
    Mizoguchi, T
    Urao, T
    Katagiri, T
    Nakashima, K
    Abe, H
    Ichimura, K
    Liu, QA
    Nanjyo, T
    Uno, Y
    Iuchi, S
    Seki, M
    Ito, T
    Hirayama, T
    Mikami, K
    JOURNAL OF PLANT RESEARCH, 1998, 111 (1102) : 345 - 351
  • [49] Responses of Arabidopsis thaliana to challenge by Pseudomonas syringae
    Kim, Min Gab
    Kim, Sun Young
    Kim, Woe Yeon
    Mackey, David
    Lee, Sang Yeol
    MOLECULES AND CELLS, 2008, 25 (03) : 323 - 331
  • [50] Transcriptional responses of Arabidopsis thaliana to oil contamination
    Nardeli, Sarah Muniz
    Saad, Carolina Farias
    Rossetto, Priscilla de Barros
    Caetano, Vanessa Santana
    Ribeiro-Alves, Marcelo
    Santos Paes, Jorge Eduardo
    Danielowski, Rodrigo
    da Maia, Luciano Carlos
    de Oliveira, Antonio Costa
    Peixoto, Raquel Silva
    Reinert, Fernanda
    Alves-Ferreira, Marcio
    ENVIRONMENTAL AND EXPERIMENTAL BOTANY, 2016, 127 : 63 - 72