Identification of active denitrifiers in full-scale nutrient removal wastewater treatment systems

被引:240
作者
McIlroy, Simon Jon [1 ]
Starnawska, Anna [1 ]
Starnawski, Piotr [1 ]
Saunders, Aaron Marc [1 ]
Nierychlo, Marta [1 ]
Nielsen, Per Halkjr [1 ]
Nielsen, Jeppe Lund [1 ]
机构
[1] Aalborg Univ, Ctr Microbial Communities, Dept Biotechnol Chem & Environm Engn, Aalborg, Denmark
关键词
16S RIBOSOMAL-RNA; BIOLOGICAL PHOSPHORUS REMOVAL; IN-SITU HYBRIDIZATION; POLYPHOSPHATE-ACCUMULATING BACTERIA; TARGETED OLIGONUCLEOTIDE PROBES; MICROBIAL COMMUNITY; DEPENDENT DENITRIFICATION; SP NOV; SLUDGE; MICROAUTORADIOGRAPHY;
D O I
10.1111/1462-2920.12614
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Denitrification is essential to the removal of nitrogen from wastewater during treatment, yet an understanding of the diversity of the active denitrifying bacteria responsible in full-scale wastewater treatment plants (WWTPs) is lacking. In this study, stable-isotope probing (SIP) was applied in combination with microautoradiography (MAR)-fluorescence in situ hybridization (FISH) to identify previously unrecognized active denitrifying phylotypes in a full-scale WWTP with biological N and P removal. Acknowledging that different denitrifiers will have specific carbon source preferences, a fully C-13-labelled complex substrate was used for SIP incubations, under nitrite-reducing conditions, in order to maximize the capture of the potentially metabolically diverse denitrifiers likely present. Members of the Rhodoferax, Dechloromonas, Sulfuritalea, Haliangium and Thermomonas were represented in the 16S rRNA gene clone libraries from DNA enriched in C-13, with FISH probes optimized here for their in situ characterization. FISH and MAR confirmed that they were all active denitrifiers in the community. The combined approach of SIP and MAR-FISH represents an excellent approach for identifying and characterizing an un-described diversity of active denitrifiers in full-scale systems.
引用
收藏
页码:50 / 64
页数:15
相关论文
共 56 条
[1]   Ecology of the microbial community removing phosphate from wastewater under continuously aerobic conditions in a sequencing batch reactor [J].
Ahn, Johwan ;
Schroeder, Sarah ;
Beer, Michael ;
McIlroy, Simon ;
Bayly, Ronald C. ;
May, John W. ;
Vasiliadis, George ;
Seviour, Robert J. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2007, 73 (07) :2257-2270
[2]   COMBINATION OF 16S RIBOSOMAL-RNA-TARGETED OLIGONUCLEOTIDE PROBES WITH FLOW-CYTOMETRY FOR ANALYZING MIXED MICROBIAL-POPULATIONS [J].
AMANN, RI ;
BINDER, BJ ;
OLSON, RJ ;
CHISHOLM, SW ;
DEVEREUX, R ;
STAHL, DA .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 1990, 56 (06) :1919-1925
[3]  
[Anonymous], 2005, Molecular Microbial Ecology
[4]   At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies [J].
Ashelford, KE ;
Chuzhanova, NA ;
Fry, JC ;
Jones, AJ ;
Weightman, AJ .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2005, 71 (12) :7724-7736
[5]   New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras [J].
Ashelford, Kevin E. ;
Chuzhanova, Nadia A. ;
Fry, John C. ;
Jones, Antonia J. ;
Weightman, Andrew J. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2006, 72 (09) :5734-5741
[6]   Nucleic acid contamination of glycogen used in nucleic acid precipitation and assessment of linear polyacrylamide as an alternative co-precipitant [J].
Bartram, Andrea K. ;
Poon, Calvin ;
Neufeld, Josh D. .
BIOTECHNIQUES, 2009, 47 (06) :1016-1019
[7]   The Ribosomal Database Project: improved alignments and new tools for rRNA analysis [J].
Cole, J. R. ;
Wang, Q. ;
Cardenas, E. ;
Fish, J. ;
Chai, B. ;
Farris, R. J. ;
Kulam-Syed-Mohideen, A. S. ;
McGarrell, D. M. ;
Marsh, T. ;
Garrity, G. M. ;
Tiedje, J. M. .
NUCLEIC ACIDS RESEARCH, 2009, 37 :D141-D145
[8]   daime, a novel image analysis program for microbial ecology and biofilm research [J].
Daims, H ;
Lücker, S ;
Wagner, M .
ENVIRONMENTAL MICROBIOLOGY, 2006, 8 (02) :200-213
[9]   The domain-specific probe EUB338 is insufficient for the detection of all Bacteria:: Development and evaluation of a more comprehensive probe set [J].
Daims, H ;
Brühl, A ;
Amann, R ;
Schleifer, KH ;
Wagner, M .
SYSTEMATIC AND APPLIED MICROBIOLOGY, 1999, 22 (03) :434-444
[10]  
Daims H, 2010, MICROBIAL ECOLOGY OF ACTIVATED SLUDGE, P259