Multi-omic biomarker identification and validation for diagnosing warzone-related post-traumatic stress disorder

被引:62
作者
Dean, Kelsey R. [1 ,2 ]
Hammamieh, Rasha [3 ]
Mellon, Synthia H. [4 ]
Abu-Amara, Duna [5 ]
Flory, Janine D. [6 ,7 ]
Guffanti, Guia [8 ]
Wang, Kai [9 ]
Daigle, Bernie J., Jr. [10 ,11 ]
Gautam, Aarti [3 ]
Lee, Inyoul [9 ]
Yang, Ruoting [12 ]
Almli, Lynn M. [13 ]
Bersani, F. Saverio [14 ,15 ]
Chakraborty, Nabarun [16 ]
Donohue, Duncan [16 ]
Kerley, Kimberly [13 ]
Kim, Taek-Kyun [9 ]
Laska, Eugene [5 ]
Lee, Min Young [9 ]
Lindqvist, Daniel [14 ,17 ]
Lori, Adriana [13 ]
Lu, Liangqun [10 ,11 ]
Misganaw, Burook [2 ]
Muhie, Seid [16 ]
Newman, Jennifer [5 ]
Price, Nathan D. [9 ]
Qin, Shizhen [9 ]
Reus, Victor, I [14 ]
Siegel, Carole [5 ]
Somvanshi, Pramod R. [2 ]
Thakur, Gunjan S. [2 ]
Zhou, Yong [9 ]
Hood, Leroy [9 ]
Ressler, Kerry J. [8 ]
Wolkowitz, Owen M. [14 ]
Yehuda, Rachel [6 ,7 ]
Jett, Marti [3 ]
Doyle, Francis J., III [2 ]
Marmar, Charles [5 ]
机构
[1] Harvard Univ, Dept Syst Biol, Cambridge, MA 02138 USA
[2] Harvard Univ, Harvard John A Paulson Sch Engn & Appl Sci, Cambridge, MA 02138 USA
[3] USACEHR, Integrat Syst Biol, US Army Med Res & Mat Command, Frederick, MD USA
[4] Univ Calif San Francisco, Dept Obstet Gynecol & Reprod Sci, San Francisco, CA 94143 USA
[5] New York Langone Med Sch, Dept Psychiat, New York, NY USA
[6] James J Peters VA Med Ctr, Dept Psychiat, Bronx, NY USA
[7] Icahn Sch Med Mt Sinai, Dept Psychiat, New York, NY 10029 USA
[8] McLean Hosp, Dept Psychiat, 115 Mill St, Belmont, MA 02178 USA
[9] Inst Syst Biol, Seattle, WA USA
[10] Univ Memphis, Dept Biol Sci, Memphis, TN 38152 USA
[11] Univ Memphis, Dept Comp Sci, Memphis, TN 38152 USA
[12] Frederick Natl Lab Canc Res, Adv Biomed Comp Ctr, Frederick, MD USA
[13] Emory Univ, Dept Psychiat & Behav Sci, Atlanta, GA 30322 USA
[14] Univ Calif San Francisco, Dept Psychiat, San Francisco, CA 94143 USA
[15] Sapienza Univ Rome, Dept Human Neurosci, Rome, Italy
[16] USACEHR, Geneva Fdn, Frederick, MD USA
[17] Lund Univ, Fac Med, Dept Clin Sci, Lund, Sweden
关键词
GLOBAL ARGININE BIOAVAILABILITY; MEAN PLATELET VOLUME; GENE-EXPRESSION; VETERANS; RISK; PTSD; DEPRESSION; POPULATION; PREDICTORS; SYMPTOMS;
D O I
10.1038/s41380-019-0496-z
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Post-traumatic stress disorder (PTSD) impacts many veterans and active duty soldiers, but diagnosis can be problematic due to biases in self-disclosure of symptoms, stigma within military populations, and limitations identifying those at risk. Prior studies suggest that PTSD may be a systemic illness, affecting not just the brain, but the entire body. Therefore, disease signals likely span multiple biological domains, including genes, proteins, cells, tissues, and organism-level physiological changes. Identification of these signals could aid in diagnostics, treatment decision-making, and risk evaluation. In the search for PTSD diagnostic biomarkers, we ascertained over one million molecular, cellular, physiological, and clinical features from three cohorts of male veterans. In a discovery cohort of 83 warzone-related PTSD cases and 82 warzone-exposed controls, we identified a set of 343 candidate biomarkers. These candidate biomarkers were selected from an integrated approach using (1) data-driven methods, including Support Vector Machine with Recursive Feature Elimination and other standard or published methodologies, and (2) hypothesis-driven approaches, using previous genetic studies for polygenic risk, or other PTSD-related literature. After reassessment of ~30% of these participants, we refined this set of markers from 343 to 28, based on their performance and ability to track changes in phenotype over time. The final diagnostic panel of 28 features was validated in an independent cohort (26 cases, 26 controls) with good performance (AUC=0.80, 81% accuracy, 85% sensitivity, and 77% specificity). The identification and validation of this diverse diagnostic panel represents a powerful and novel approach to improve accuracy and reduce bias in diagnosing combat-related PTSD.
引用
收藏
页码:3337 / 3349
页数:13
相关论文
共 61 条
  • [1] Global arginine bioavailability ratio is decreased in patients with major depressive disorder
    Ali-Sisto, Toni
    Tolmunen, Tommi
    Viinamaki, Heimo
    Mantyselka, Pekka
    Valkonen-Korhonen, Minna
    Koivumaa-Honkanen, Heli
    Honkalampi, Kirsi
    Ruusunen, Anu
    Nandania, Jatin
    Velagapudi, Vidya
    Lehto, Soili M.
    [J]. JOURNAL OF AFFECTIVE DISORDERS, 2018, 229 : 145 - 151
  • [2] American Psychiatric Association, 2013, DSM5 AM PSYCH ASS, DOI 10.5555/appi.books.9780890425596.x00pre
  • [3] Regulation of Connective Tissue Growth Factor and Cardiac Fibrosis by an SRF/MicroRNA-133a Axis
    Angelini, Aude
    Li, Zhenlin
    Mericskay, Mathias
    Decaux, Jean-Francois
    [J]. PLOS ONE, 2015, 10 (10):
  • [4] Clinical implications of omics and systems medicine: focus on predictive and individualized treatment
    Benson, M.
    [J]. JOURNAL OF INTERNAL MEDICINE, 2016, 279 (03) : 229 - 240
  • [5] Global arginine bioavailability, a marker of nitric oxide synthetic capacity, is decreased in PTSD and correlated with symptom severity and markers of inflammation
    Bersani, Francesco Saverio
    Wolkowitz, Owen M.
    Lindqvist, Daniel
    Yehuda, Rachel
    Flory, Janine
    Bierer, Linda M.
    Makotine, Iouri
    Abu-Amara, Duna
    Coy, Michelle
    Reus, Victor I.
    Epel, Elissa S.
    Marmar, Charles
    Mellon, Synthia H.
    [J]. BRAIN BEHAVIOR AND IMMUNITY, 2016, 52 : 153 - 160
  • [6] Blake D.D., 1990, BEHAV THERAPIST, V18, P187
  • [7] Biological predictors of insulin resistance associated with posttraumatic stress disorder in young military veterans
    Blessing, Esther M.
    Reus, Victor
    Mellon, Synthia H.
    Wolkowitz, Owen M.
    Flory, Janine D.
    Bierer, Linda
    Lindqvist, Daniel
    Dhabhar, Firdaus
    Li, Meng
    Qian, Meng
    Abu-Amara, Duna
    Galatzer-Levy, Isaac
    Yehuda, Rachel
    Marmar, Charles R.
    [J]. PSYCHONEUROENDOCRINOLOGY, 2017, 82 : 91 - 97
  • [8] Risk of Diabetes in US Military Service Members in Relation to Combat Deployment and Mental Health
    Boyko, Edward J.
    Jacobson, Isabel G.
    Smith, Besa
    Ryan, Margaret A. K.
    Hoofer, Tomoko I.
    Amoroso, Paul J.
    Gackstetter, Gary D.
    Barrett-Connor, Elizabeth
    Smith, Tyler C.
    [J]. DIABETES CARE, 2010, 33 (08) : 1771 - 1777
  • [9] PTSD Blood Transcriptome Mega-Analysis: Shared Inflammatory Pathways across Biological Sex and Modes of Trauma
    Breen, Michael S.
    Tylee, Daniel S.
    Maihofer, Adam X.
    Neylan, Thomas C.
    Mehta, Divya
    Binder, Elisabeth B.
    Chandler, Sharon D.
    Hess, Jonathan L.
    Kremen, William S.
    Risbrough, Victoria B.
    Woelk, Christopher H.
    Baker, Dewleen G.
    Nievergelt, Caroline M.
    Tsuang, Ming T.
    Buxbaum, Joseph D.
    Glatt, Stephen J.
    [J]. NEUROPSYCHOPHARMACOLOGY, 2018, 43 (03) : 469 - 481
  • [10] SUBSTANCE-ABUSE AND POSTTRAUMATIC-STRESS-DISORDER COMORBIDITY
    BROWN, PJ
    WOLFE, J
    [J]. DRUG AND ALCOHOL DEPENDENCE, 1994, 35 (01) : 51 - 59