Integrating Extrinsic and Intrinsic Cues into a Minimal Model of Lineage Commitment for Hematopoietic Progenitors

被引:20
作者
Palani, Santhosh [1 ]
Sarkar, Casim A. [1 ,2 ]
机构
[1] Univ Penn, Dept Bioengn, Philadelphia, PA 19104 USA
[2] Univ Penn, Dept Chem & Biomol Engn, Philadelphia, PA 19104 USA
基金
美国国家科学基金会;
关键词
COLONY-STIMULATING FACTOR; TRANSCRIPTION FACTORS GATA-1; STEM-CELLS; FACTOR-RECEPTOR; NEGATIVE FEEDBACK; PU.1; SPI-1; DIFFERENTIATION; BISTABILITY; CHOICE; MACROPHAGE;
D O I
10.1371/journal.pcbi.1000518
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Autoregulation of transcription factors and cross-antagonism between lineage-specific transcription factors are a recurrent theme in cell differentiation. An equally prevalent event that is frequently overlooked in lineage commitment models is the upregulation of lineage-specific receptors, often through lineage-specific transcription factors. Here, we use a minimal model that combines cell-extrinsic and cell-intrinsic elements of regulation in order to understand how both instructive and stochastic events can inform cell commitment decisions in hematopoiesis. Our results suggest that cytokine-mediated positive receptor feedback can induce a "switch-like'' response to external stimuli during multilineage differentiation by providing robustness to both bipotent and committed states while protecting progenitors from noise-induced differentiation or decommitment. Our model provides support to both the instructive and stochastic theories of commitment: cell fates are ultimately driven by lineage-specific transcription factors, but cytokine signaling can strongly bias lineage commitment by regulating these inherently noisy cell-fate decisions with complex, pertinent behaviors such as ligand-mediated ultrasensitivity and robust multistability. The simulations further suggest that the kinetics of differentiation to a mature cell state can depend on the starting progenitor state as well as on the route of commitment that is chosen. Lastly, our model shows good agreement with lineage-specific receptor expression kinetics from microarray experiments and provides a computational framework that can integrate both classical and alternative commitment paths in hematopoiesis that have been observed experimentally.
引用
收藏
页数:12
相关论文
共 41 条
[1]   Evidence that hematopoiesis may be a stochastic process in vivo [J].
Abkowitz, JL ;
Catlin, SN ;
Guttorp, P .
NATURE MEDICINE, 1996, 2 (02) :190-197
[2]   Identification of Flt3+ lympho-myeloid stem cells lacking erythro-megakaryocytic potential:: A revised road map for adult blood lineage commitment [J].
Adolfsson, J ;
Månsson, R ;
Buza-Vidas, N ;
Hultquist, A ;
Liuba, K ;
Jensen, CT ;
Bryder, D ;
Yang, LP ;
Borge, OJ ;
Thoren, LAM ;
Anderson, K ;
Sitnicka, E ;
Sasaki, Y ;
Sigvardsson, M ;
Jacobsen, SEW .
CELL, 2005, 121 (02) :295-306
[3]   A clonogenic common myeloid progenitor that gives rise to all myeloid lineages [J].
Akashi, K ;
Traver, D ;
Miyamoto, T ;
Weissman, IL .
NATURE, 2000, 404 (6774) :193-197
[4]   The different faces of Notch in T-helper-cell differentiation [J].
Amsen, Derk ;
Antov, Andrey ;
Flavell, Richard A. .
NATURE REVIEWS IMMUNOLOGY, 2009, 9 (02) :116-124
[5]   Molecular signatures of self-renewal, differentiation, and lineage choice in multipotential hemopoietic progenitor cells in vitro [J].
Bruno, L ;
Hoffmann, R ;
McBlane, F ;
Brown, J ;
Gupta, R ;
Joshi, C ;
Pearson, S ;
Seidl, T ;
Heyworth, C ;
Enver, T .
MOLECULAR AND CELLULAR BIOLOGY, 2004, 24 (02) :741-756
[6]   Immunology and mathematics: crossing the divide [J].
Callard, RE ;
Yates, AJ .
IMMUNOLOGY, 2005, 115 (01) :21-33
[7]   Hematopoietic development: a balancing act [J].
Cantor, AB ;
Orkin, SH .
CURRENT OPINION IN GENETICS & DEVELOPMENT, 2001, 11 (05) :513-519
[8]   Transcriptome-wide noise controls lineage choice in mammalian progenitor cells [J].
Chang, Hannah H. ;
Hemberg, Martin ;
Barahona, Mauricio ;
Ingber, Donald E. ;
Huang, Sui .
NATURE, 2008, 453 (7194) :544-U10
[9]  
CHENG ADY, 1995, GRAVITATION COSMOLOG, V1, P1
[10]   GATA-1 TRANSACTIVATES ERYTHROPOIETIN RECEPTOR GENE, AND ERYTHROPOIETIN RECEPTOR-MEDIATED SIGNALS ENHANCE GATA-1 GENE-EXPRESSION [J].
CHIBA, T ;
IKAWA, Y ;
TODOKORO, K .
NUCLEIC ACIDS RESEARCH, 1991, 19 (14) :3843-3848