Constructing Overview plus Detail Dendrogram-Matrix Views

被引:11
作者
Chen, Jin [1 ]
MacEachren, Alan M. [1 ]
Peuquet, Donna J. [1 ]
机构
[1] Penn State Univ, Dept Geog, GeoVISTA Ctr, University Pk, PA 16802 USA
关键词
Dendrogram; reorderable matrix; compound graphs; data abstraction quality metrics; hierarchical clusters; VISUALIZATION; INFORMATION; NAVIGATION;
D O I
10.1109/TVCG.2009.130
中图分类号
TP31 [计算机软件];
学科分类号
081202 ; 0835 ;
摘要
A dendrogram that visualizes a clustering hierarchy is often integrated with a reorderable matrix for pattern identification. The method is widely used in many research fields including biology, geography, statistics, and data mining. However, most dendrograms do not scale up well, particularly with respect to problems of graphical and cognitive information overload. This research proposes a strategy that links an overview dendrogram and a detail-view dendrogram, each integrated with a re-orderable matrix. The overview displays only a user-controlled, limited number of nodes that represent the "skeleton" of a hierarchy. The detail view displays the sub-tree represented by a selected meta-node in the overview. The research presented here focuses on constructing a concise overview dendrogram and its coordination with a detail view. The proposed method has the following benefits: dramatic alleviation of information overload, enhanced scalability and data abstraction quality on the dendrogram, and the support of data exploration at arbitrary levels of detail. The contribution of the paper includes a new metric to measure the "importance" of nodes in a dendrogram; the method to construct the concise overview dendrogram from the dynamically-identified, important nodes; and measure for evaluating the data abstraction quality for dendrograms. We evaluate and compare the proposed method to some related existing methods, and demonstrating how the proposed method can help users find interesting patterns through a case study on county-level U.S. cervical cancer mortality and demographic data.
引用
收藏
页码:889 / 896
页数:8
相关论文
共 30 条
[1]   Matrix zoom: A visual interface to semi-external graphs [J].
Abello, J ;
van Ham, F .
IEEE SYMPOSIUM ON INFORMATION VISUALIZATION 2004, PROCEEDINGS, 2004, :183-190
[2]   Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling [J].
Alizadeh, AA ;
Eisen, MB ;
Davis, RE ;
Ma, C ;
Lossos, IS ;
Rosenwald, A ;
Boldrick, JG ;
Sabet, H ;
Tran, T ;
Yu, X ;
Powell, JI ;
Yang, LM ;
Marti, GE ;
Moore, T ;
Hudson, J ;
Lu, LS ;
Lewis, DB ;
Tibshirani, R ;
Sherlock, G ;
Chan, WC ;
Greiner, TC ;
Weisenburger, DD ;
Armitage, JO ;
Warnke, R ;
Levy, R ;
Wilson, W ;
Grever, MR ;
Byrd, JC ;
Botstein, D ;
Brown, PO ;
Staudt, LM .
NATURE, 2000, 403 (6769) :503-511
[3]  
[Anonymous], 2005, NIH PUBLICATION
[4]   K-ary clustering with optimal leaf ordering for gene expression data [J].
Bar-Joseph, Z ;
Demaine, ED ;
Gifford, DK ;
Srebro, N ;
Hamel, AM ;
Jaakkola, TS .
BIOINFORMATICS, 2003, 19 (09) :1070-1078
[5]   Geovisual analytics to enhance spatial scan statistic interpretation: an analysis of US cervical cancer mortality [J].
Chen, Jin ;
Roth, Robert E. ;
Naito, Adam T. ;
Lengerich, Eugene J. ;
MacEachren, Alan M. .
INTERNATIONAL JOURNAL OF HEALTH GEOGRAPHICS, 2008, 7 (1)
[6]   Resolution Control for Balancing Overview and Detail in Multivariate Spatial Analysis [J].
Chen, Jin ;
MacEachren, Alan M. .
CARTOGRAPHIC JOURNAL, 2008, 45 (04) :261-273
[7]   Supporting the process of exploring and interpreting space - Time multivariate patterns: The visual inquiry toolkit [J].
Chen, Jin ;
MacEachren, Alan M. ;
Guo, Diansheng .
Cartography and Geographic Information Science, 2008, 35 (01) :33-50
[8]   Measuring data abstraction quality in multiresolution visualizations [J].
Cui, Qingguang ;
Ward, Matthew O. ;
Rundensteiner, Elke A. ;
Yang, Jing .
IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS, 2006, 12 (05) :709-716
[9]  
Eades P., 1997, Graph Drawing. Symposium on Graph Drawing, GD '96. Proceedings, P101
[10]   Cluster analysis and display of genome-wide expression patterns [J].
Eisen, MB ;
Spellman, PT ;
Brown, PO ;
Botstein, D .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (25) :14863-14868