Similarity of RNA secondary structures

被引：15

作者：

Li, Chun ^{[1
]}

Wang, Aj-Hua ^{[1
]}

Xing, Lili ^{[1
]}

机构：

[1] Bohai Univ, Dept Math, Jinzhou 121000, Peoples R China

来源：

JOURNAL OF COMPUTATIONAL CHEMISTRY | 2007年 / 28卷 / 02期

关键词：

RNA secondary structure; sequence complexity; similarity; virus;

D O I：

10.1002/jcc.20571

中图分类号：

O6 [化学];

学科分类号：

0703 ;

摘要：

In this article, we propose a relatively similar measure to compare RNA secondary structures. We first transform an RNA secondary structure into a special sequence representation. Then, on the basis of symbolic sequence complexity. we obtain the relative distance of RNA secondary structures. The examination of similarities/dissimilarities of a set of RNA secondary structures at the 3'-terminus of different viruses illustrates the utility of the approach. (C) 2006 Wiley Periodicals, Inc.

引用

页码：508 / 512

页数：5

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